NCBI C++ ToolKit
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CSeq_descr_SplitInfo Class Reference

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#include <objmgr/split/object_splitinfo.hpp>

+ Inheritance diagram for CSeq_descr_SplitInfo:
+ Collaboration diagram for CSeq_descr_SplitInfo:

Public Member Functions

 CSeq_descr_SplitInfo (const CPlaceId &place_id, TSeqPos seq_length, const CSeq_descr &descr, const SSplitterParams &params)
 
TAnnotPriority GetPriority (void) const
 
int Compare (const CSeq_descr_SplitInfo &other) const
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Public Attributes

CConstRef< CSeq_descrm_Descr
 
TAnnotPriority m_Priority
 
CSize m_Size
 
CSeqsRange m_Location
 
vector< CRef< CSeq_descr_SplitInfo > > m_SubPieces
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 219 of file object_splitinfo.hpp.

Constructor & Destructor Documentation

◆ CSeq_descr_SplitInfo()

CSeq_descr_SplitInfo::CSeq_descr_SplitInfo ( const CPlaceId place_id,
TSeqPos  seq_length,
const CSeq_descr descr,
const SSplitterParams params 
)

Member Function Documentation

◆ Compare()

int CSeq_descr_SplitInfo::Compare ( const CSeq_descr_SplitInfo other) const

Definition at line 553 of file object_splitinfo.cpp.

References CSize::Compare(), CSeq_descr_Base::Get(), m_Descr, and m_Size.

Referenced by SAnnotPiece::operator<().

◆ GetPriority()

TAnnotPriority CSeq_descr_SplitInfo::GetPriority ( void  ) const

Definition at line 547 of file object_splitinfo.cpp.

References m_Priority.

Member Data Documentation

◆ m_Descr

CConstRef<CSeq_descr> CSeq_descr_SplitInfo::m_Descr

Definition at line 231 of file object_splitinfo.hpp.

Referenced by Compare().

◆ m_Location

CSeqsRange CSeq_descr_SplitInfo::m_Location

Definition at line 236 of file object_splitinfo.hpp.

Referenced by CSeq_descr_SplitInfo().

◆ m_Priority

TAnnotPriority CSeq_descr_SplitInfo::m_Priority

◆ m_Size

CSize CSeq_descr_SplitInfo::m_Size

Definition at line 235 of file object_splitinfo.hpp.

Referenced by Compare(), and CSeq_descr_SplitInfo().

◆ m_SubPieces

vector< CRef<CSeq_descr_SplitInfo> > CSeq_descr_SplitInfo::m_SubPieces
mutable

Definition at line 237 of file object_splitinfo.hpp.


The documentation for this class was generated from the following files:
Modified on Sun Apr 14 05:26:42 2024 by modify_doxy.py rev. 669887