NCBI C++ ToolKit
Public Types | Public Member Functions | Static Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members

Represents ASN.1 type Seq-feat defined in file seqfeat.asn

Search Toolkit Book for CSeq_feat_Base

*** Seq-feat ******************************************* * sequence feature generalization More...

#include <objects/seqfeat/Seq_feat_.hpp>

+ Inheritance diagram for CSeq_feat_Base:
+ Collaboration diagram for CSeq_feat_Base:

Public Types

enum  EExp_ev { eExp_ev_experimental = 1 , eExp_ev_not_experimental = 2 }
 evidence for existence of feature More...
 
enum class  E_memberIndex {
  e__allMandatory = 0 , e_id , e_data , e_partial ,
  e_except , e_comment , e_product , e_location ,
  e_qual , e_title , e_ext , e_cit ,
  e_exp_ev , e_xref , e_dbxref , e_pseudo ,
  e_except_text , e_ids , e_exts , e_support
}
 
typedef CFeat_id TId
 
typedef CSeqFeatData TData
 
typedef bool TPartial
 
typedef bool TExcept
 
typedef string TComment
 
typedef CSeq_loc TProduct
 
typedef CSeq_loc TLocation
 
typedef vector< CRef< CGb_qual > > TQual
 
typedef string TTitle
 
typedef CUser_object TExt
 
typedef CPub_set TCit
 
typedef EExp_ev TExp_ev
 
typedef vector< CRef< CSeqFeatXref > > TXref
 
typedef vector< CRef< CDbtag > > TDbxref
 
typedef bool TPseudo
 
typedef string TExcept_text
 
typedef list< CRef< CFeat_id > > TIds
 
typedef list< CRef< CUser_object > > TExts
 
typedef CSeqFeatSupport TSupport
 
typedef Tparent::CMemberIndex< E_memberIndex, 20 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CSeq_feat_Base (void)
 
virtual ~CSeq_feat_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void ResetId (void)
 Reset Id data member. More...
 
const TIdGetId (void) const
 Get the Id member data. More...
 
void SetId (TId &value)
 Assign a value to Id data member. More...
 
TIdSetId (void)
 Assign a value to Id data member. More...
 
bool IsSetData (void) const
 the specific data Check if a value has been assigned to Data data member. More...
 
bool CanGetData (void) const
 Check if it is safe to call GetData method. More...
 
void ResetData (void)
 Reset Data data member. More...
 
const TDataGetData (void) const
 Get the Data member data. More...
 
void SetData (TData &value)
 Assign a value to Data data member. More...
 
TDataSetData (void)
 Assign a value to Data data member. More...
 
bool IsSetPartial (void) const
 incomplete in some way? Check if a value has been assigned to Partial data member. More...
 
bool CanGetPartial (void) const
 Check if it is safe to call GetPartial method. More...
 
void ResetPartial (void)
 Reset Partial data member. More...
 
TPartial GetPartial (void) const
 Get the Partial member data. More...
 
void SetPartial (TPartial value)
 Assign a value to Partial data member. More...
 
TPartialSetPartial (void)
 Assign a value to Partial data member. More...
 
bool IsSetExcept (void) const
 something funny about this? Check if a value has been assigned to Except data member. More...
 
bool CanGetExcept (void) const
 Check if it is safe to call GetExcept method. More...
 
void ResetExcept (void)
 Reset Except data member. More...
 
TExcept GetExcept (void) const
 Get the Except member data. More...
 
void SetExcept (TExcept value)
 Assign a value to Except data member. More...
 
TExceptSetExcept (void)
 Assign a value to Except data member. More...
 
bool IsSetComment (void) const
 Check if a value has been assigned to Comment data member. More...
 
bool CanGetComment (void) const
 Check if it is safe to call GetComment method. More...
 
void ResetComment (void)
 Reset Comment data member. More...
 
const TCommentGetComment (void) const
 Get the Comment member data. More...
 
void SetComment (const TComment &value)
 Assign a value to Comment data member. More...
 
void SetComment (TComment &&value)
 
TCommentSetComment (void)
 Assign a value to Comment data member. More...
 
bool IsSetProduct (void) const
 product of process Check if a value has been assigned to Product data member. More...
 
bool CanGetProduct (void) const
 Check if it is safe to call GetProduct method. More...
 
void ResetProduct (void)
 Reset Product data member. More...
 
const TProductGetProduct (void) const
 Get the Product member data. More...
 
void SetProduct (TProduct &value)
 Assign a value to Product data member. More...
 
TProductSetProduct (void)
 Assign a value to Product data member. More...
 
bool IsSetLocation (void) const
 feature made from Check if a value has been assigned to Location data member. More...
 
bool CanGetLocation (void) const
 Check if it is safe to call GetLocation method. More...
 
void ResetLocation (void)
 Reset Location data member. More...
 
const TLocationGetLocation (void) const
 Get the Location member data. More...
 
void SetLocation (TLocation &value)
 Assign a value to Location data member. More...
 
TLocationSetLocation (void)
 Assign a value to Location data member. More...
 
bool IsSetQual (void) const
 qualifiers Check if a value has been assigned to Qual data member. More...
 
bool CanGetQual (void) const
 Check if it is safe to call GetQual method. More...
 
void ResetQual (void)
 Reset Qual data member. More...
 
const TQualGetQual (void) const
 Get the Qual member data. More...
 
TQualSetQual (void)
 Assign a value to Qual data member. More...
 
bool IsSetTitle (void) const
 for user defined label Check if a value has been assigned to Title data member. More...
 
bool CanGetTitle (void) const
 Check if it is safe to call GetTitle method. More...
 
void ResetTitle (void)
 Reset Title data member. More...
 
const TTitleGetTitle (void) const
 Get the Title member data. More...
 
void SetTitle (const TTitle &value)
 Assign a value to Title data member. More...
 
void SetTitle (TTitle &&value)
 
TTitleSetTitle (void)
 Assign a value to Title data member. More...
 
bool IsSetExt (void) const
 user defined structure extension Check if a value has been assigned to Ext data member. More...
 
bool CanGetExt (void) const
 Check if it is safe to call GetExt method. More...
 
void ResetExt (void)
 Reset Ext data member. More...
 
const TExtGetExt (void) const
 Get the Ext member data. More...
 
void SetExt (TExt &value)
 Assign a value to Ext data member. More...
 
TExtSetExt (void)
 Assign a value to Ext data member. More...
 
bool IsSetCit (void) const
 citations for this feature Check if a value has been assigned to Cit data member. More...
 
bool CanGetCit (void) const
 Check if it is safe to call GetCit method. More...
 
void ResetCit (void)
 Reset Cit data member. More...
 
const TCitGetCit (void) const
 Get the Cit member data. More...
 
void SetCit (TCit &value)
 Assign a value to Cit data member. More...
 
TCitSetCit (void)
 Assign a value to Cit data member. More...
 
bool IsSetExp_ev (void) const
 Check if a value has been assigned to Exp_ev data member. More...
 
bool CanGetExp_ev (void) const
 Check if it is safe to call GetExp_ev method. More...
 
void ResetExp_ev (void)
 Reset Exp_ev data member. More...
 
TExp_ev GetExp_ev (void) const
 Get the Exp_ev member data. More...
 
void SetExp_ev (TExp_ev value)
 Assign a value to Exp_ev data member. More...
 
TExp_evSetExp_ev (void)
 Assign a value to Exp_ev data member. More...
 
bool IsSetXref (void) const
 cite other relevant features Check if a value has been assigned to Xref data member. More...
 
bool CanGetXref (void) const
 Check if it is safe to call GetXref method. More...
 
void ResetXref (void)
 Reset Xref data member. More...
 
const TXrefGetXref (void) const
 Get the Xref member data. More...
 
TXrefSetXref (void)
 Assign a value to Xref data member. More...
 
bool IsSetDbxref (void) const
 support for xref to other databases Check if a value has been assigned to Dbxref data member. More...
 
bool CanGetDbxref (void) const
 Check if it is safe to call GetDbxref method. More...
 
void ResetDbxref (void)
 Reset Dbxref data member. More...
 
const TDbxrefGetDbxref (void) const
 Get the Dbxref member data. More...
 
TDbxrefSetDbxref (void)
 Assign a value to Dbxref data member. More...
 
bool IsSetPseudo (void) const
 annotated on pseudogene? Check if a value has been assigned to Pseudo data member. More...
 
bool CanGetPseudo (void) const
 Check if it is safe to call GetPseudo method. More...
 
void ResetPseudo (void)
 Reset Pseudo data member. More...
 
TPseudo GetPseudo (void) const
 Get the Pseudo member data. More...
 
void SetPseudo (TPseudo value)
 Assign a value to Pseudo data member. More...
 
TPseudoSetPseudo (void)
 Assign a value to Pseudo data member. More...
 
bool IsSetExcept_text (void) const
 explain if except=TRUE Check if a value has been assigned to Except_text data member. More...
 
bool CanGetExcept_text (void) const
 Check if it is safe to call GetExcept_text method. More...
 
void ResetExcept_text (void)
 Reset Except_text data member. More...
 
const TExcept_textGetExcept_text (void) const
 Get the Except_text member data. More...
 
void SetExcept_text (const TExcept_text &value)
 Assign a value to Except_text data member. More...
 
void SetExcept_text (TExcept_text &&value)
 
TExcept_textSetExcept_text (void)
 Assign a value to Except_text data member. More...
 
bool IsSetIds (void) const
 set of Ids; will replace 'id' field Check if a value has been assigned to Ids data member. More...
 
bool CanGetIds (void) const
 Check if it is safe to call GetIds method. More...
 
void ResetIds (void)
 Reset Ids data member. More...
 
const TIdsGetIds (void) const
 Get the Ids member data. More...
 
TIdsSetIds (void)
 Assign a value to Ids data member. More...
 
bool IsSetExts (void) const
 set of extensions; will replace 'ext' field Check if a value has been assigned to Exts data member. More...
 
bool CanGetExts (void) const
 Check if it is safe to call GetExts method. More...
 
void ResetExts (void)
 Reset Exts data member. More...
 
const TExtsGetExts (void) const
 Get the Exts member data. More...
 
TExtsSetExts (void)
 Assign a value to Exts data member. More...
 
bool IsSetSupport (void) const
 will replace /experiment, /inference, model-evidence Check if a value has been assigned to Support data member. More...
 
bool CanGetSupport (void) const
 Check if it is safe to call GetSupport method. More...
 
void ResetSupport (void)
 Reset Support data member. More...
 
const TSupportGetSupport (void) const
 Get the Support member data. More...
 
void SetSupport (TSupport &value)
 Assign a value to Support data member. More...
 
TSupportSetSupport (void)
 Assign a value to Support data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Static Public Member Functions

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() EExp_ev (void)
 Access to EExp_ev's attributes (values, names) as defined in spec. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CSeq_feat_Base (const CSeq_feat_Base &)
 
CSeq_feat_Baseoperator= (const CSeq_feat_Base &)
 

Private Attributes

Uint4 m_set_State [2]
 
CRef< TIdm_Id
 
CRef< TDatam_Data
 
bool m_Partial
 
bool m_Except
 
string m_Comment
 
CRef< TProductm_Product
 
CRef< TLocationm_Location
 
vector< CRef< CGb_qual > > m_Qual
 
string m_Title
 
CRef< TExtm_Ext
 
CRef< TCitm_Cit
 
EExp_ev m_Exp_ev
 
vector< CRef< CSeqFeatXref > > m_Xref
 
vector< CRef< CDbtag > > m_Dbxref
 
bool m_Pseudo
 
string m_Except_text
 
list< CRef< CFeat_id > > m_Ids
 
list< CRef< CUser_object > > m_Exts
 
CRef< TSupportm_Support
 

Additional Inherited Members

- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

*** Seq-feat ******************************************* * sequence feature generalization

CSeq_feat_Base

Definition at line 88 of file Seq_feat_.hpp.


The documentation for this class was generated from the following files:
Modified on Fri Jun 14 16:49:39 2024 by modify_doxy.py rev. 669887