Represents ASN.1 type Seq-id defined in file seqloc.asn

*** Sequence identifiers ******************************** * More...

#include <objects/seqloc/Seq_id_.hpp>

Inheritance diagram for CSeq_id_Base:

Collaboration diagram for CSeq_id_Base:

Public Types
enum	E_Choice { e_not_set = 0 , e_Local , e_Gibbsq , e_Gibbmt , e_Giim , e_Genbank , e_Embl , e_Pir , e_Swissprot , e_Patent , e_Other , e_General , e_Gi , e_Ddbj , e_Prf , e_Pdb , e_Tpg , e_Tpe , e_Tpd , e_Gpipe , e_Named_annot_track }
	Choice variants. More...

enum	E_ChoiceStopper { e_MaxChoice = 21 }
	Maximum+1 value of the choice variant enumerator. More...

typedef CObject_id	TLocal

typedef int	TGibbsq

typedef int	TGibbmt

typedef CGiimport_id	TGiim

typedef CTextseq_id	TGenbank

typedef CTextseq_id	TEmbl

typedef CTextseq_id	TPir

typedef CTextseq_id	TSwissprot

typedef CPatent_seq_id	TPatent

typedef CTextseq_id	TOther

typedef CDbtag	TGeneral

typedef NCBI_NS_NCBI::TGi	TGi

typedef CTextseq_id	TDdbj

typedef CTextseq_id	TPrf

typedef CPDB_seq_id	TPdb

typedef CTextseq_id	TTpg

typedef CTextseq_id	TTpe

typedef CTextseq_id	TTpd

typedef CTextseq_id	TGpipe

typedef CTextseq_id	TNamed_annot_track

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CSeq_id_Base (void)

virtual	~CSeq_id_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

virtual void	Reset (void)
	Reset the whole object. More...

virtual void	ResetSelection (void)
	Reset the selection (set it to e_not_set). More...

E_Choice	Which (void) const
	Which variant is currently selected. More...

void	CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...

void	ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...

void	Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...

void	Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...

bool	IsLocal (void) const
	Check if variant Local is selected. More...

const TLocal &	GetLocal (void) const
	Get the variant data. More...

TLocal &	SetLocal (void)
	Select the variant. More...

void	SetLocal (TLocal &value)
	Select the variant and set its data. More...

bool	IsGibbsq (void) const
	Check if variant Gibbsq is selected. More...

TGibbsq	GetGibbsq (void) const
	Get the variant data. More...

TGibbsq &	SetGibbsq (void)
	Select the variant. More...

void	SetGibbsq (TGibbsq value)
	Select the variant and set its data. More...

bool	IsGibbmt (void) const
	Check if variant Gibbmt is selected. More...

TGibbmt	GetGibbmt (void) const
	Get the variant data. More...

TGibbmt &	SetGibbmt (void)
	Select the variant. More...

void	SetGibbmt (TGibbmt value)
	Select the variant and set its data. More...

bool	IsGiim (void) const
	Check if variant Giim is selected. More...

const TGiim &	GetGiim (void) const
	Get the variant data. More...

TGiim &	SetGiim (void)
	Select the variant. More...

void	SetGiim (TGiim &value)
	Select the variant and set its data. More...

bool	IsGenbank (void) const
	Check if variant Genbank is selected. More...

const TGenbank &	GetGenbank (void) const
	Get the variant data. More...

TGenbank &	SetGenbank (void)
	Select the variant. More...

void	SetGenbank (TGenbank &value)
	Select the variant and set its data. More...

bool	IsEmbl (void) const
	Check if variant Embl is selected. More...

const TEmbl &	GetEmbl (void) const
	Get the variant data. More...

TEmbl &	SetEmbl (void)
	Select the variant. More...

void	SetEmbl (TEmbl &value)
	Select the variant and set its data. More...

bool	IsPir (void) const
	Check if variant Pir is selected. More...

const TPir &	GetPir (void) const
	Get the variant data. More...

TPir &	SetPir (void)
	Select the variant. More...

void	SetPir (TPir &value)
	Select the variant and set its data. More...

bool	IsSwissprot (void) const
	Check if variant Swissprot is selected. More...

const TSwissprot &	GetSwissprot (void) const
	Get the variant data. More...

TSwissprot &	SetSwissprot (void)
	Select the variant. More...

void	SetSwissprot (TSwissprot &value)
	Select the variant and set its data. More...

bool	IsPatent (void) const
	Check if variant Patent is selected. More...

const TPatent &	GetPatent (void) const
	Get the variant data. More...

TPatent &	SetPatent (void)
	Select the variant. More...

void	SetPatent (TPatent &value)
	Select the variant and set its data. More...

bool	IsOther (void) const
	Check if variant Other is selected. More...

const TOther &	GetOther (void) const
	Get the variant data. More...

TOther &	SetOther (void)
	Select the variant. More...

void	SetOther (TOther &value)
	Select the variant and set its data. More...

bool	IsGeneral (void) const
	Check if variant General is selected. More...

const TGeneral &	GetGeneral (void) const
	Get the variant data. More...

TGeneral &	SetGeneral (void)
	Select the variant. More...

void	SetGeneral (TGeneral &value)
	Select the variant and set its data. More...

bool	IsGi (void) const
	Check if variant Gi is selected. More...

TGi	GetGi (void) const
	Get the variant data. More...

TGi &	SetGi (void)
	Select the variant. More...

void	SetGi (TGi value)
	Select the variant and set its data. More...

bool	IsDdbj (void) const
	Check if variant Ddbj is selected. More...

const TDdbj &	GetDdbj (void) const
	Get the variant data. More...

TDdbj &	SetDdbj (void)
	Select the variant. More...

void	SetDdbj (TDdbj &value)
	Select the variant and set its data. More...

bool	IsPrf (void) const
	Check if variant Prf is selected. More...

const TPrf &	GetPrf (void) const
	Get the variant data. More...

TPrf &	SetPrf (void)
	Select the variant. More...

void	SetPrf (TPrf &value)
	Select the variant and set its data. More...

bool	IsPdb (void) const
	Check if variant Pdb is selected. More...

const TPdb &	GetPdb (void) const
	Get the variant data. More...

TPdb &	SetPdb (void)
	Select the variant. More...

void	SetPdb (TPdb &value)
	Select the variant and set its data. More...

bool	IsTpg (void) const
	Check if variant Tpg is selected. More...

const TTpg &	GetTpg (void) const
	Get the variant data. More...

TTpg &	SetTpg (void)
	Select the variant. More...

void	SetTpg (TTpg &value)
	Select the variant and set its data. More...

bool	IsTpe (void) const
	Check if variant Tpe is selected. More...

const TTpe &	GetTpe (void) const
	Get the variant data. More...

TTpe &	SetTpe (void)
	Select the variant. More...

void	SetTpe (TTpe &value)
	Select the variant and set its data. More...

bool	IsTpd (void) const
	Check if variant Tpd is selected. More...

const TTpd &	GetTpd (void) const
	Get the variant data. More...

TTpd &	SetTpd (void)
	Select the variant. More...

void	SetTpd (TTpd &value)
	Select the variant and set its data. More...

bool	IsGpipe (void) const
	Check if variant Gpipe is selected. More...

const TGpipe &	GetGpipe (void) const
	Get the variant data. More...

TGpipe &	SetGpipe (void)
	Select the variant. More...

void	SetGpipe (TGpipe &value)
	Select the variant and set its data. More...

bool	IsNamed_annot_track (void) const
	Check if variant Named_annot_track is selected. More...

const TNamed_annot_track &	GetNamed_annot_track (void) const
	Get the variant data. More...

TNamed_annot_track &	SetNamed_annot_track (void)
	Select the variant. More...

void	SetNamed_annot_track (TNamed_annot_track &value)
	Select the variant and set its data. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static string	SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CSerialObject	Tparent

Private Member Functions
	CSeq_id_Base (const CSeq_id_Base &)

CSeq_id_Base &	operator= (const CSeq_id_Base &)

void	DoSelect (E_Choice index, CObjectMemoryPool *pool=0)

Private Attributes
E_Choice	m_choice

union {
TGibbsq CSeq_id_Base::m_Gibbsq

TGibbmt CSeq_id_Base::m_Gibbmt

ncbi::TIntId CSeq_id_Base::m_Gi

NCBI_NS_NCBI::CSerialObject * CSeq_id_Base::m_object

};

Static Private Attributes
static const char *const	sm_SelectionNames []

Additional Inherited Members
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

*** Sequence identifiers ******************************** *

CSeq_id_Base –

Definition at line 79 of file Seq_id_.hpp.

The documentation for this class was generated from the following files:

include/objects/seqloc/Seq_id_.hpp
src/objects/seqloc/Seq_id_.cpp

Public Types

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Private Attributes

Static Private Attributes

Additional Inherited Members

Detailed Description