CSeq_loc_Mapper_Options Class Reference

Search Toolkit Book for CSeq_loc_Mapper_Options

CSeq_loc_Mapper_Options –. More...

#include <objects/seq/seq_loc_mapper_base.hpp>

Collaboration diagram for CSeq_loc_Mapper_Options:

Public Types
typedef int	TMapOptions

Public Member Functions
	CSeq_loc_Mapper_Options (void)
	CSeq_loc_Mapper_Options (IMapper_Sequence_Info *seq_info, TMapOptions opts=0)
	CSeq_loc_Mapper_Options (TMapOptions opts)
IMapper_Sequence_Info *	GetMapperSequenceInfo (void) const
	Sequence type, length etc. More...
CSeq_loc_Mapper_Options &	SetMapperSequenceInfo (IMapper_Sequence_Info *seq_info)
bool	GetAlign_Dense_seg_TotalRange (void) const
	Dense-seg mapping option. More...
CSeq_loc_Mapper_Options &	SetAlign_Dense_seg_TotalRange (bool value=true)
bool	GetAlign_Sparse_ToFirst (void) const
	Mapping direction when mapping through a sparse-seg. More...
bool	GetAlign_Sparse_ToSecond (void) const
CSeq_loc_Mapper_Options &	SetAlign_Sparse_ToFirst (bool value=true)
CSeq_loc_Mapper_Options &	SetAlign_Sparse_ToSecond (bool value=true)
bool	GetMapSingleLevel (void) const
	Mapping depth when using a seq-map, a bioseq or a GC-assembly. More...
CSeq_loc_Mapper_Options &	SetMapSingleLevel (bool value=true)
bool	GetTrimMappedLocation (void) const
	Mapped location trimming at sequence end. More...
CSeq_loc_Mapper_Options &	SetTrimMappedLocation (bool value=true)

Private Member Functions
IMapper_Sequence_Info &	GetSeqInfo (void) const
	CSeq_loc_Mapper_Options –. More...
bool	x_IsSetOption (int opt) const
void	x_SetOption (int opt, bool enable)

Private Attributes
CRef< IMapper_Sequence_Info >	m_SeqInfo
TMapOptions	m_Options

Friends
class	CSeq_loc_Mapper_Base

Detailed Description

CSeq_loc_Mapper_Options –.

Options passed to CSeq_loc_Mapper[_Base] constructor.

Definition at line 282 of file seq_loc_mapper_base.hpp.

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The documentation for this class was generated from the following files:

• include/objects/seq/seq_loc_mapper_base.hpp
• src/objects/seq/seq_loc_mapper_base.cpp