NCBI C++ ToolKit
Public Member Functions | Protected Attributes | List of all members
CSequenceInfo Class Reference

Search Toolkit Book for CSequenceInfo

#include <objtools/readers/alnread.hpp>

Public Member Functions

 CSequenceInfo ()
 
 CSequenceInfo (const string &alphabet, const string &match, const string &missing, const string &beginningGap, const string &middleGap, const string &endGap)
 
const stringAlphabet () const
 
CSequenceInfoSetAlphabet (const string &alphabet)
 
const stringMatch () const
 
CSequenceInfoSetMatch (const string &c)
 
const stringMissing () const
 
CSequenceInfoSetMissing (const string &c)
 
const stringBeginningGap () const
 
CSequenceInfoSetBeginningGap (const string &c)
 
const stringMiddleGap () const
 
CSequenceInfoSetMiddleGap (const string &c)
 
const stringEndGap () const
 
CSequenceInfoSetEndGap (const string &c)
 

Protected Attributes

string mAlphabet
 
string mMatch
 
string mMissing
 
string mBeginningGap
 
string mMiddleGap
 
string mEndGap
 

Detailed Description

Definition at line 58 of file alnread.hpp.

Constructor & Destructor Documentation

◆ CSequenceInfo() [1/2]

CSequenceInfo::CSequenceInfo ( )
inline

Definition at line 61 of file alnread.hpp.

◆ CSequenceInfo() [2/2]

CSequenceInfo::CSequenceInfo ( const string alphabet,
const string match,
const string missing,
const string beginningGap,
const string middleGap,
const string endGap 
)
inline

Definition at line 64 of file alnread.hpp.

Member Function Documentation

◆ Alphabet()

const string& CSequenceInfo::Alphabet ( ) const
inline

◆ BeginningGap()

const string& CSequenceInfo::BeginningGap ( ) const
inline

Definition at line 101 of file alnread.hpp.

References mBeginningGap.

Referenced by CAlnScanner::xVerifySingleSequenceData().

◆ EndGap()

const string& CSequenceInfo::EndGap ( ) const
inline

Definition at line 115 of file alnread.hpp.

References mEndGap.

Referenced by CAlnScanner::xVerifySingleSequenceData().

◆ Match()

const string& CSequenceInfo::Match ( void  ) const
inline

Definition at line 87 of file alnread.hpp.

References mMatch.

Referenced by CAlnScanner::xVerifySingleSequenceData().

◆ MiddleGap()

const string& CSequenceInfo::MiddleGap ( ) const
inline

Definition at line 108 of file alnread.hpp.

References mMiddleGap.

Referenced by CAlnScanner::xVerifySingleSequenceData().

◆ Missing()

const string& CSequenceInfo::Missing ( ) const
inline

Definition at line 94 of file alnread.hpp.

References mMissing.

Referenced by CAlnScanner::xVerifySingleSequenceData().

◆ SetAlphabet()

CSequenceInfo& CSequenceInfo::SetAlphabet ( const string alphabet)
inline

Definition at line 83 of file alnread.hpp.

References mAlphabet.

◆ SetBeginningGap()

CSequenceInfo& CSequenceInfo::SetBeginningGap ( const string c)
inline

◆ SetEndGap()

CSequenceInfo& CSequenceInfo::SetEndGap ( const string c)
inline

◆ SetMatch()

CSequenceInfo& CSequenceInfo::SetMatch ( const string c)
inline

◆ SetMiddleGap()

CSequenceInfo& CSequenceInfo::SetMiddleGap ( const string c)
inline

◆ SetMissing()

CSequenceInfo& CSequenceInfo::SetMissing ( const string c)
inline

Member Data Documentation

◆ mAlphabet

string CSequenceInfo::mAlphabet
protected

Definition at line 122 of file alnread.hpp.

Referenced by Alphabet(), and SetAlphabet().

◆ mBeginningGap

string CSequenceInfo::mBeginningGap
protected

Definition at line 125 of file alnread.hpp.

Referenced by BeginningGap(), and SetBeginningGap().

◆ mEndGap

string CSequenceInfo::mEndGap
protected

Definition at line 127 of file alnread.hpp.

Referenced by EndGap(), and SetEndGap().

◆ mMatch

string CSequenceInfo::mMatch
protected

Definition at line 123 of file alnread.hpp.

Referenced by Match(), and SetMatch().

◆ mMiddleGap

string CSequenceInfo::mMiddleGap
protected

Definition at line 126 of file alnread.hpp.

Referenced by MiddleGap(), and SetMiddleGap().

◆ mMissing

string CSequenceInfo::mMissing
protected

Definition at line 124 of file alnread.hpp.

Referenced by Missing(), and SetMissing().


The documentation for this class was generated from the following file:
Modified on Mon May 20 05:03:23 2024 by modify_doxy.py rev. 669887