NCBI C++ ToolKit
Public Member Functions | Private Types | Private Member Functions | List of all members

Represents ASN.1 type Site-annot defined in file scoremat.asn

Search Toolkit Book for CSite_annot

CSite_annot –. More...

#include <objects/scoremat/Site_annot.hpp>

+ Inheritance diagram for CSite_annot:
+ Collaboration diagram for CSite_annot:

Public Member Functions

 CSite_annot (void)
 
 ~CSite_annot (void)
 
- Public Member Functions inherited from CSite_annot_Base
 CSite_annot_Base (void)
 
virtual ~CSite_annot_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetStartPosition (void) const
 location of the annotation, Check if a value has been assigned to StartPosition data member. More...
 
bool CanGetStartPosition (void) const
 Check if it is safe to call GetStartPosition method. More...
 
void ResetStartPosition (void)
 Reset StartPosition data member. More...
 
TStartPosition GetStartPosition (void) const
 Get the StartPosition member data. More...
 
void SetStartPosition (TStartPosition value)
 Assign a value to StartPosition data member. More...
 
TStartPositionSetStartPosition (void)
 Assign a value to StartPosition data member. More...
 
bool IsSetStopPosition (void) const
 start and stop position in the PSSM Check if a value has been assigned to StopPosition data member. More...
 
bool CanGetStopPosition (void) const
 Check if it is safe to call GetStopPosition method. More...
 
void ResetStopPosition (void)
 Reset StopPosition data member. More...
 
TStopPosition GetStopPosition (void) const
 Get the StopPosition member data. More...
 
void SetStopPosition (TStopPosition value)
 Assign a value to StopPosition data member. More...
 
TStopPositionSetStopPosition (void)
 Assign a value to StopPosition data member. More...
 
bool IsSetDescription (void) const
 holds description or names, that can be used for labels in visualization Check if a value has been assigned to Description data member. More...
 
bool CanGetDescription (void) const
 Check if it is safe to call GetDescription method. More...
 
void ResetDescription (void)
 Reset Description data member. More...
 
const TDescriptionGetDescription (void) const
 Get the Description member data. More...
 
void SetDescription (const TDescription &value)
 Assign a value to Description data member. More...
 
void SetDescription (TDescription &&value)
 
TDescriptionSetDescription (void)
 Assign a value to Description data member. More...
 
bool IsSetType (void) const
 type of the annotated feature, similarly to Align-annot in NCBI-Cdd Check if a value has been assigned to Type data member. More...
 
bool CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void ResetType (void)
 Reset Type data member. More...
 
TType GetType (void) const
 Get the Type member data. More...
 
void SetType (TType value)
 Assign a value to Type data member. More...
 
TTypeSetType (void)
 Assign a value to Type data member. More...
 
bool IsSetAliases (void) const
 additional names for the annotation Check if a value has been assigned to Aliases data member. More...
 
bool CanGetAliases (void) const
 Check if it is safe to call GetAliases method. More...
 
void ResetAliases (void)
 Reset Aliases data member. More...
 
const TAliasesGetAliases (void) const
 Get the Aliases member data. More...
 
TAliasesSetAliases (void)
 Assign a value to Aliases data member. More...
 
bool IsSetMotif (void) const
 motif to validate mapping of sites Check if a value has been assigned to Motif data member. More...
 
bool CanGetMotif (void) const
 Check if it is safe to call GetMotif method. More...
 
void ResetMotif (void)
 Reset Motif data member. More...
 
const TMotifGetMotif (void) const
 Get the Motif member data. More...
 
void SetMotif (const TMotif &value)
 Assign a value to Motif data member. More...
 
void SetMotif (TMotif &&value)
 
TMotifSetMotif (void)
 Assign a value to Motif data member. More...
 
bool IsSetMotifuse (void) const
 0 for validation 1 for motif in seqloc 2 for multiple motifs in seqloc Check if a value has been assigned to Motifuse data member. More...
 
bool CanGetMotifuse (void) const
 Check if it is safe to call GetMotifuse method. More...
 
void ResetMotifuse (void)
 Reset Motifuse data member. More...
 
TMotifuse GetMotifuse (void) const
 Get the Motifuse member data. More...
 
void SetMotifuse (TMotifuse value)
 Assign a value to Motifuse data member. More...
 
TMotifuseSetMotifuse (void)
 Assign a value to Motifuse data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSite_annot_Base Tparent
 

Private Member Functions

 CSite_annot (const CSite_annot &value)
 
CSite_annotoperator= (const CSite_annot &value)
 

Additional Inherited Members

- Public Types inherited from CSite_annot_Base
enum class  E_memberIndex {
  e__allMandatory = 0 , e_startPosition , e_stopPosition , e_description ,
  e_type , e_aliases , e_motif , e_motifuse
}
 
typedef int TStartPosition
 
typedef int TStopPosition
 
typedef string TDescription
 
typedef int TType
 
typedef list< stringTAliases
 
typedef string TMotif
 
typedef int TMotifuse
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CSite_annot –.

Definition at line 65 of file Site_annot.hpp.


The documentation for this class was generated from the following files:
Modified on Thu Mar 28 17:12:43 2024 by modify_doxy.py rev. 669887