NCBI C++ ToolKit
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Search Toolkit Book for CSpecificity_Base::C_Attlist

C_Attlist –. More...

#include <algo/ms/formats/pepxml/Specificity_.hpp>

+ Inheritance diagram for CSpecificity_Base::C_Attlist:
+ Collaboration diagram for CSpecificity_Base::C_Attlist:

Public Types

enum  EAttlist_sense { eAttlist_sense_C = 1 , eAttlist_sense_N = 2 }
 
enum class  E_memberIndex {
  e__allMandatory = 0 , e_sense , e_min_spacing , e_cut ,
  e_no_cut
}
 
typedef EAttlist_sense TSense
 
typedef int TMin_spacing
 
typedef string TCut
 
typedef string TNo_cut
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 C_Attlist (void)
 
 ~C_Attlist (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetSense (void) const
 Defines whether cleavage occurs on the C-terminal or N-terminal side of the residue(s) listed in cut Check if a value has been assigned to Sense data member. More...
 
bool CanGetSense (void) const
 Check if it is safe to call GetSense method. More...
 
void ResetSense (void)
 Reset Sense data member. More...
 
TSense GetSense (void) const
 Get the Sense member data. More...
 
void SetSense (TSense value)
 Assign a value to Sense data member. More...
 
TSenseSetSense (void)
 Assign a value to Sense data member. More...
 
bool IsSetMin_spacing (void) const
 Check if a value has been assigned to Min_spacing data member. More...
 
bool CanGetMin_spacing (void) const
 Check if it is safe to call GetMin_spacing method. More...
 
void ResetMin_spacing (void)
 Reset Min_spacing data member. More...
 
void SetDefaultMin_spacing (void)
 Assign default value to Min_spacing data member. More...
 
TMin_spacing GetMin_spacing (void) const
 Get the Min_spacing member data. More...
 
void SetMin_spacing (TMin_spacing value)
 Assign a value to Min_spacing data member. More...
 
TMin_spacingSetMin_spacing (void)
 Assign a value to Min_spacing data member. More...
 
bool IsSetCut (void) const
 Check if a value has been assigned to Cut data member. More...
 
bool CanGetCut (void) const
 Check if it is safe to call GetCut method. More...
 
void ResetCut (void)
 Reset Cut data member. More...
 
const TCutGetCut (void) const
 Get the Cut member data. More...
 
void SetCut (const TCut &value)
 Assign a value to Cut data member. More...
 
void SetCut (TCut &&value)
 
TCutSetCut (void)
 Assign a value to Cut data member. More...
 
bool IsSetNo_cut (void) const
 Check if a value has been assigned to No_cut data member. More...
 
bool CanGetNo_cut (void) const
 Check if it is safe to call GetNo_cut method. More...
 
void ResetNo_cut (void)
 Reset No_cut data member. More...
 
const TNo_cutGetNo_cut (void) const
 Get the No_cut member data. More...
 
void SetNo_cut (const TNo_cut &value)
 Assign a value to No_cut data member. More...
 
void SetNo_cut (TNo_cut &&value)
 
TNo_cutSetNo_cut (void)
 Assign a value to No_cut data member. More...
 
void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Static Public Member Functions

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() EAttlist_sense (void)
 Access to EAttlist_sense's attributes (values, names) as defined in spec. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 C_Attlist (const C_Attlist &)
 
C_Attlistoperator= (const C_Attlist &)
 

Private Attributes

Uint4 m_set_State [1]
 
EAttlist_sense m_Sense
 
int m_Min_spacing
 
string m_Cut
 
string m_No_cut
 

Additional Inherited Members

- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

C_Attlist –.

Definition at line 90 of file Specificity_.hpp.


The documentation for this class was generated from the following files:
Modified on Mon May 20 05:02:03 2024 by modify_doxy.py rev. 669887