Search Toolkit Book for CSrcTableOrgModColumn

#include <gui/packages/pkg_sequence_edit/srcedit_util.hpp>

Inheritance diagram for CSrcTableOrgModColumn:

Collaboration diagram for CSrcTableOrgModColumn:

Public Member Functions
	CSrcTableOrgModColumn (objects::COrgMod::TSubtype subtype)

virtual bool	AddToBioSource (objects::CBioSource &src, const string &newValue, objects::edit::EExistingText existing_text)

virtual void	ClearInBioSource (objects::CBioSource &in_out_bioSource)

virtual string	GetFromBioSource (const objects::CBioSource &in_out_bioSource) const

virtual vector< string >	GetValsFromBioSource (const objects::CBioSource &biosrc) const

virtual string	GetLabel () const

virtual bool	AllowMultipleValues ()

	CSrcTableOrgModColumn (objects::COrgMod::TSubtype subtype)

virtual void	AddToBioSource (objects::CBioSource &in_out_bioSource, const string &newValue)

virtual void	ClearInBioSource (objects::CBioSource &in_out_bioSource)

virtual string	GetFromBioSource (const objects::CBioSource &in_out_bioSource) const

virtual string	GetLabel () const

Public Member Functions inherited from CSrcTableColumnBase
virtual vector< string >	IsValid (const vector< string > &values)

virtual void	SetConstraint (const string &field_name, CConstRef< edit::CStringConstraint > string_constraint)

vector< CRef< objects::edit::CApplyObject > >	GetApplyObjects (CBioseq_Handle bsh)

vector< CConstRef< CObject > >	GetObjects (CBioseq_Handle bsh)

string	GetVal (const CObject &object)

vector< string >	GetVals (const CObject &object)

void	ClearVal (CObject &object)

void	SetSourceType (ESourceType type)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Protected Attributes
objects::COrgMod::TSubtype	m_Subtype

Additional Inherited Members
Public Types inherited from CSrcTableColumnBase
enum	ESourceType { eNotSet = 0 , eDescriptor , eFeature }

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 381 of file srcedit_util.hpp.

Constructor & Destructor Documentation

◆ CSrcTableOrgModColumn() [1/2]

CSrcTableOrgModColumn::CSrcTableOrgModColumn ( objects::COrgMod::TSubtype subtype )

inline

Definition at line 384 of file srcedit_util.hpp.

◆ CSrcTableOrgModColumn() [2/2]

CSrcTableOrgModColumn::CSrcTableOrgModColumn ( objects::COrgMod::TSubtype subtype )

inline

Definition at line 128 of file src_table_column.hpp.

References m_Subtype.

Member Function Documentation

◆ AddToBioSource() [1/2]

void CSrcTableOrgModColumn::AddToBioSource	(	objects::CBioSource &	in_out_bioSource,
		const string &	newValue
	)

virtual

Reimplemented from CSrcTableColumnBase.

Definition at line 215 of file src_table_column.cpp.

References NStr::IsBlank(), and m_Subtype.

◆ AddToBioSource() [2/2]

virtual bool CSrcTableOrgModColumn::AddToBioSource	(	objects::CBioSource &	src,
		const string &	newValue,
		objects::edit::EExistingText	existing_text
	)

virtual

Reimplemented from CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

◆ AllowMultipleValues()

virtual bool CSrcTableOrgModColumn::AllowMultipleValues ( )

inlinevirtual

Reimplemented from CSrcTableColumnBase.

Definition at line 393 of file srcedit_util.hpp.

◆ ClearInBioSource() [1/2]

void CSrcTableOrgModColumn::ClearInBioSource ( objects::CBioSource & in_out_bioSource )

virtual

Reimplemented from CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

Definition at line 224 of file src_table_column.cpp.

References m_Subtype.

◆ ClearInBioSource() [2/2]

virtual void CSrcTableOrgModColumn::ClearInBioSource ( objects::CBioSource & in_out_bioSource )

virtual

Reimplemented from CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

◆ GetFromBioSource() [1/2]

string CSrcTableOrgModColumn::GetFromBioSource ( const objects::CBioSource & in_out_bioSource ) const

virtual

Implements CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

Definition at line 240 of file src_table_column.cpp.

References m_Subtype, and val.

Referenced by CSrcStructuredVoucherPartColumn::GetFromBioSource().

◆ GetFromBioSource() [2/2]

virtual string CSrcTableOrgModColumn::GetFromBioSource ( const objects::CBioSource & in_out_bioSource ) const

virtual

Implements CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

◆ GetLabel() [1/2]

string CSrcTableOrgModColumn::GetLabel ( void ) const

inlinevirtual

Reimplemented from CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

Definition at line 392 of file srcedit_util.hpp.

References GetSubtypeName(), and m_Subtype.

◆ GetLabel() [2/2]

virtual string CSrcTableOrgModColumn::GetLabel ( ) const

virtual

Reimplemented from CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

◆ GetValsFromBioSource()

vector< string > CSrcTableOrgModColumn::GetValsFromBioSource ( const objects::CBioSource & biosrc ) const

virtual

Reimplemented from CSrcTableColumnBase.

Reimplemented in CSrcStructuredVoucherPartColumn.

Definition at line 1723 of file srcedit_util.cpp.

References COrgName_Base::GetMod(), CBioSource_Base::GetOrg(), COrg_ref_Base::GetOrgname(), COrgName_Base::IsSetMod(), CBioSource_Base::IsSetOrg(), COrg_ref_Base::IsSetOrgname(), m_Subtype, and val.

Member Data Documentation

◆ m_Subtype

objects::COrgMod::TSubtype CSrcTableOrgModColumn::m_Subtype

protected

Definition at line 395 of file srcedit_util.hpp.

Referenced by AddToBioSource(), CSrcStructuredVoucherPartColumn::AddToBioSource(), ClearInBioSource(), CSrcStructuredVoucherPartColumn::ClearInBioSource(), CSrcTableOrgModColumn(), GetFromBioSource(), GetLabel(), CSrcStructuredVoucherPartColumn::GetLabel(), and GetValsFromBioSource().

The documentation for this class was generated from the following files:

include/gui/packages/pkg_sequence_edit/srcedit_util.hpp
src/app/biosample_chk/src_table_column.hpp
src/app/biosample_chk/src_table_column.cpp
src/gui/packages/pkg_sequence_edit/srcedit_util.cpp

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CSrcTableOrgModColumn() [1/2]

◆ CSrcTableOrgModColumn() [2/2]

Member Function Documentation

◆ AddToBioSource() [1/2]

◆ AddToBioSource() [2/2]

◆ AllowMultipleValues()

◆ ClearInBioSource() [1/2]

◆ ClearInBioSource() [2/2]

◆ GetFromBioSource() [1/2]

◆ GetFromBioSource() [2/2]

◆ GetLabel() [1/2]

◆ GetLabel() [2/2]

◆ GetValsFromBioSource()

Member Data Documentation

◆ m_Subtype