CSymDustMasker Member List

This is the complete list of members for CSymDustMasker, including all inherited members.

convert_t typedef	CSymDustMasker	private
converter_	CSymDustMasker	private
CSymDustMasker(Uint4 level=DEFAULT_LEVEL, size_type window=static_cast< size_type >(DEFAULT_WINDOW), size_type linker=static_cast< size_type >(DEFAULT_LINKER))	CSymDustMasker
DEFAULT_LEVEL	CSymDustMasker	static
DEFAULT_LINKER	CSymDustMasker	static
DEFAULT_WINDOW	CSymDustMasker	static
GetMaskedInts(objects::CSeq_id &seq_id, const sequence_type &seq)	CSymDustMasker
GetMaskedLocs(objects::CSeq_id &seq_id, const sequence_type &seq, std::vector< CConstRef< objects::CSeq_loc > > &locs)	CSymDustMasker
level_	CSymDustMasker	private
linker_	CSymDustMasker	private
low_k_	CSymDustMasker	private
operator()(const sequence_type &seq)	CSymDustMasker
operator()(const sequence_type &seq, size_type start, size_type stop)	CSymDustMasker
P	CSymDustMasker	private
perfect_list_type typedef	CSymDustMasker
save_masked_regions(TMaskList &res, size_type w, size_type start)	CSymDustMasker	inlineprivate
seq_citer_type typedef	CSymDustMasker	private
seq_t typedef	CSymDustMasker	private
sequence_type typedef	CSymDustMasker
size_type typedef	CSymDustMasker
thres_table_type typedef	CSymDustMasker
thresholds_	CSymDustMasker	private
TMaskedInterval typedef	CSymDustMasker
TMaskList typedef	CSymDustMasker
TRIPLET_MASK	CSymDustMasker	static
triplet_type typedef	CSymDustMasker
window_	CSymDustMasker	private