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Search Toolkit Book for CTMgr_GenomeContext_Base

CTMgr_GenomeContext_Base –. More...

#include <objects/trackmgr/TMgr_GenomeContext_.hpp>

+ Inheritance diagram for CTMgr_GenomeContext_Base:
+ Collaboration diagram for CTMgr_GenomeContext_Base:

Classes

class  C_Assembly_and_sequence
 C_Assembly_and_sequence –. More...
 

Public Types

enum  E_Choice {
  e_not_set = 0 , e_Assembly , e_Sequence , e_Refseqgene ,
  e_All , e_Assembly_and_sequence
}
 Choice variants. More...
 
enum  E_ChoiceStopper { e_MaxChoice = 6 }
 Maximum+1 value of the choice variant enumerator. More...
 
typedef CTMgr_AssemblySpec TAssembly
 
typedef CSeq_id TSequence
 
typedef C_Assembly_and_sequence TAssembly_and_sequence
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CTMgr_GenomeContext_Base (void)
 
virtual ~CTMgr_GenomeContext_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
virtual void Reset (void)
 Reset the whole object. More...
 
virtual void ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice Which (void) const
 Which variant is currently selected. More...
 
void CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
void Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool IsAssembly (void) const
 Check if variant Assembly is selected. More...
 
const TAssemblyGetAssembly (void) const
 Get the variant data. More...
 
TAssemblySetAssembly (void)
 Select the variant. More...
 
void SetAssembly (TAssembly &value)
 Select the variant and set its data. More...
 
bool IsSequence (void) const
 Check if variant Sequence is selected. More...
 
const TSequenceGetSequence (void) const
 Get the variant data. More...
 
TSequenceSetSequence (void)
 Select the variant. More...
 
void SetSequence (TSequence &value)
 Select the variant and set its data. More...
 
bool IsRefseqgene (void) const
 Check if variant Refseqgene is selected. More...
 
void SetRefseqgene (void)
 Select the variant. More...
 
bool IsAll (void) const
 Check if variant All is selected. More...
 
void SetAll (void)
 Select the variant. More...
 
bool IsAssembly_and_sequence (void) const
 Check if variant Assembly_and_sequence is selected. More...
 
const TAssembly_and_sequenceGetAssembly_and_sequence (void) const
 Get the variant data. More...
 
TAssembly_and_sequenceSetAssembly_and_sequence (void)
 Select the variant. More...
 
void SetAssembly_and_sequence (TAssembly_and_sequence &value)
 Select the variant and set its data. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Static Public Member Functions

static string SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CTMgr_GenomeContext_Base (const CTMgr_GenomeContext_Base &)
 
CTMgr_GenomeContext_Baseoperator= (const CTMgr_GenomeContext_Base &)
 
void DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
 

Private Attributes

E_Choice m_choice
 
union {
   NCBI_NS_NCBI::CSerialObject *   CTMgr_GenomeContext_Base::m_object
 
}; 
 

Static Private Attributes

static const char *const sm_SelectionNames []
 

Additional Inherited Members

- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CTMgr_GenomeContext_Base –.

Definition at line 76 of file TMgr_GenomeContext_.hpp.


The documentation for this class was generated from the following files:
Modified on Fri Sep 20 14:58:00 2024 by modify_doxy.py rev. 669887