NCBI C++ ToolKit
CTSE_Info Member List

This is the complete list of members for CTSE_Info, including all inherited members.

AddAnnot(CSeq_annot &annot)CSeq_entry_Info
AddAnnot(CRef< CSeq_annot_Info > annot)CSeq_entry_Info
AddEntry(CSeq_entry &entry, int index=-1)CSeq_entry_Info
AddEntry(CRef< CSeq_entry_Info > entry, int index=-1)CSeq_entry_Info
AddReference(void) constCObjectinline
AddSeq_descr(const TDescr &v)CSeq_entry_Info
AddSeqdesc(CSeqdesc &d)CSeq_entry_Info
AddUsedMemory(size_t size)CTSE_Info
Assign(const CTSE_Lock &tse)CTSE_Info
Assign(const CTSE_Lock &tse, CRef< CSeq_entry > entry)CTSE_Info
BelongsToTSE_Info(const CTSE_Info &tse) constCTSE_Info_Objectinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CAnnot_Collector classCTSE_Infofriend
CBioseq_Info classCTSE_Infofriend
CBioseq_set_Info classCTSE_Infofriend
CDataLoader classCTSE_Infofriend
CDataSource classCTSE_Infofriend
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CObject(void)CObject
CObject(const CObject &src)CObject
ContainsBioseq(const CSeq_id_Handle &id) constCTSE_Info
ContainsMatchingBioseq(const CSeq_id_Handle &id) constCTSE_Info
CScope_Impl classCTSE_Infofriend
CSeq_annot_Finder classCTSE_Infofriend
CSeq_annot_Info classCTSE_Infofriend
CSeq_annot_SNP_Info classCTSE_Infofriend
CSeq_entry_Info classCTSE_Infofriend
CSeq_entry_Info::CSeq_entry_Info(const CSeq_entry_Info &info, TObjectCopyMap *copy_map)CSeq_entry_Infoexplicit
CSeq_entry_Info::CSeq_entry_Info(CSeq_entry &entry)CSeq_entry_Infoexplicit
CTSE_Chunk_Info classCTSE_Infofriend
CTSE_Default_Assigner classCTSE_Infofriend
CTSE_Guard classCTSE_Infofriend
CTSE_Info(void)CTSE_Infoexplicit
CTSE_Info(const TBlobId &blob_id, TBlobVersion blob_version=-1)CTSE_Infoexplicit
CTSE_Info(CSeq_entry &tse, TBlobState state=CBioseq_Handle::fState_none)CTSE_Infoexplicit
CTSE_Info(CSeq_entry &tse, TBlobState blob_state, const TBlobId &blob_id, TBlobVersion blob_version=-1)CTSE_Infoexplicit
CTSE_Info(const CTSE_Lock &tse)CTSE_Infoexplicit
CTSE_Info(const CTSE_Info &)CTSE_Infoprivate
CTSE_Info_Object classCTSE_Infofriend
CSeq_entry_Info::CTSE_Info_Object(const CTSE_Info_Object &src, TObjectCopyMap *copy_map)CTSE_Info_Object
CTSE_LoadLock classCTSE_Infofriend
CTSE_LoadLockGuard classCTSE_Infofriend
CTSE_Lock classCTSE_Infofriend
CTSE_ScopeInfo classCTSE_Infofriend
CTSE_Split_Info classCTSE_Infofriend
CTSEAnnotObjectMapper classCTSE_Infofriend
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
E_Choice typedefCSeq_entry_Info
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
EAnnotIdsFlags enum nameCTSE_Infoprivate
ECacheState enum nameCTSE_Infoprivate
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
eDropped enum valueCTSE_Infoprivate
eInCache enum valueCTSE_Infoprivate
eLoaded enum valueCTSE_Infoprivate
ELoadState enum nameCTSE_Infoprivate
EnableDebugDump(bool on)CDebugDumpablestatic
ENeedUpdate enum nameCTSE_Info_Object
ENeedUpdateAux enum nameCTSE_Info_Object
eNotInCache enum valueCTSE_Infoprivate
eNotLoaded enum valueCTSE_Infoprivate
ETopLevelObjectType typedefCTSE_Info
fAnnotIds_Matching enum valueCTSE_Infoprivate
fAnnotIds_NonGi enum valueCTSE_Infoprivate
FindBioseq(const CSeq_id_Handle &id) constCTSE_Info
FindMatchingBioseq(const CSeq_id_Handle &id) constCTSE_Info
fNeedUpdate_annot enum valueCTSE_Info_Object
fNeedUpdate_assembly enum valueCTSE_Info_Object
fNeedUpdate_bioseq enum valueCTSE_Info_Object
fNeedUpdate_children enum valueCTSE_Info_Object
fNeedUpdate_children_annot enum valueCTSE_Info_Object
fNeedUpdate_children_assembly enum valueCTSE_Info_Object
fNeedUpdate_children_bioseq enum valueCTSE_Info_Object
fNeedUpdate_children_core enum valueCTSE_Info_Object
fNeedUpdate_children_descr enum valueCTSE_Info_Object
fNeedUpdate_children_seq_data enum valueCTSE_Info_Object
fNeedUpdate_core enum valueCTSE_Info_Object
fNeedUpdate_descr enum valueCTSE_Info_Object
fNeedUpdate_seq_data enum valueCTSE_Info_Object
fNeedUpdate_this enum valueCTSE_Info_Object
GetAllocFillMode(void)CObjectstatic
GetAnnotIds(TSeqIds &ids) constCTSE_Infovirtual
GetAnnotLock(void) constCTSE_Infoinline
GetBaseParent_Info(void) constCTSE_Info_Object
GetBaseParent_Info(void)CTSE_Info_Object
GetBioObjectId(void) constCSeq_entry_Infovirtual
GetBioseqsIds(TSeqIds &ids) constCTSE_Infovirtual
GetBlobId(void) constCTSE_Infoinline
GetBlobOrder(void) constCTSE_Infoinline
GetBlobState(void) constCTSE_Infoinline
GetBlobStateOrder(void) constCTSE_Infoinline
GetBlobVersion(void) constCTSE_Infoinline
GetCompleteSeq_entry(void) constCSeq_entry_Info
GetCompleteTSE(void) constCTSE_Info
GetDataSource(void) constCTSE_Infoinline
GetDescr(void) constCSeq_entry_Info
GetDescription(void) constCTSE_Infovirtual
GetEditSaver() constCTSE_Infoinline
GetLoadedAnnot(void) constCSeq_entry_Info
GetMasterSeqSegments(void) constCTSE_Info
GetName(void) constCTSE_Infoinline
GetParentBioseq_set_Info(void) constCSeq_entry_Info
GetParentBioseq_set_Info(void)CSeq_entry_Info
GetParentSeq_entry_Info(void) constCSeq_entry_Info
GetParentSeq_entry_Info(void)CSeq_entry_Info
GetRequestedId(void) constCTSE_Infoinline
GetSegSetMaster(void) constCTSE_Info
GetSeq(void) constCSeq_entry_Info
GetSeq_entryCore(void) constCSeq_entry_Info
GetSeq_entrySkeleton(void) constCSeq_entry_Info
GetSeqAndAnnotIds(TSeqIds &seq_ids, TSeqIds &annot_ids) constCSeq_entry_Infovirtual
GetSeqMatch(const CSeq_id_Handle &id) constCTSE_Info
GetSet(void) constCSeq_entry_Info
GetSplitInfo(void)CTSE_Info
GetSplitInfo(void) constCTSE_Info
GetTopLevelObjectPtr() constCTSE_Info
GetTopLevelObjectType() constCTSE_Info
GetTopLevelSeq_submit() constCTSE_Info
GetTopLevelSubmit_block() constCTSE_Info
GetTSE_Info(void) constCTSE_Infoinline
GetTSE_Info(void)CTSE_Infoinline
GetTSECore(void) constCTSE_Info
GetUsedMemory(void) constCTSE_Infoinline
GetXrefTSE() constCSeq_entry_Info
HasAnnot(const CAnnotName &name) constCTSE_Info
HasDataSource(void) constCTSE_Infoinline
HasMatchingAnnotIds(void) constCTSE_Infoinline
HasNamedAnnot(const string &name) constCTSE_Info
HasNoSeq_entry(void) constCSeq_entry_Infoinline
HasParent_Info(void) constCTSE_Info_Objectinline
HasSplitInfo(void) constCTSE_Info
HasTSE_Info(void) constCTSE_Info_Objectinline
HasUnnamedAnnot(void) constCTSE_Info
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsDead(void) constCTSE_Infoinline
IsLocked(void) constCTSE_Infoinline
IsSeq(void) constCSeq_entry_Infoinline
IsSet(void) constCSeq_entry_Infoinline
IsSetDescr(void) constCSeq_entry_Info
IsTopLevelSeq_submit() constCTSE_Info
IsUnavailable(void) constCTSE_Infoinline
ITSE_Assigner classCTSE_Infofriend
kNeedUpdate_bits enum valueCTSE_Info_Object
m_AnnotIdsFlagsCTSE_Infoprivate
m_AnnotLockCTSE_Infomutableprivate
m_BaseTSECTSE_Infoprivate
m_BioObjectsCTSE_Infoprivate
m_Bioseq_setsCTSE_Infoprivate
m_BioseqsCTSE_Infoprivate
m_BioseqsMutexCTSE_Infomutableprivate
m_BioseqUpdaterCTSE_Infoprivate
m_BlobIdCTSE_Infoprivate
m_BlobStateCTSE_Infoprivate
m_BlobVersionCTSE_Infoprivate
m_CachePositionCTSE_Infomutableprivate
m_CacheStateCTSE_Infomutableprivate
m_ContentsCSeq_entry_Infoprotected
m_CounterCObjectmutableprivate
m_DataSourceCTSE_Infoprivate
m_DirtyAnnotIndexCTSE_Info_Objectprivate
m_EditSaverCTSE_Infoprivate
m_FeatIdIndexCTSE_Infoprivate
m_IdAnnotInfoMapCTSE_Infoprivate
m_InternalBioObjNumberCTSE_Infoprivate
m_LoadMutexCTSE_Infoprivate
m_LoadStateCTSE_Infoprivate
m_LockCounterCTSE_Infomutableprivate
m_LocusIndexCTSE_Infoprivate
m_MasterSeqSegmentsCTSE_Infomutableprivate
m_MasterSeqSegmentsLoadedCTSE_Infomutableprivate
m_NameCTSE_Infoprivate
m_NamedAnnotObjsCTSE_Infoprivate
m_NeedUpdateFlagsCTSE_Info_Objectprivate
m_ObjectCSeq_entry_Infoprotected
m_Parent_InfoCTSE_Info_Objectprivate
m_Removed_Bioseq_setsCTSE_Infoprivate
m_Removed_BioseqsCTSE_Infoprivate
m_RequestedIdCTSE_Infomutableprivate
m_SetObjectInfoCTSE_Infoprivate
m_SplitCTSE_Infoprivate
m_TopLevelObjectPtrCTSE_Infoprivate
m_TopLevelObjectTypeCTSE_Infoprivate
m_TSE_InfoCTSE_Info_Objectprivate
m_UniqueIdCTSE_Info_Objectprivate
m_UsedMemoryCTSE_Infoprivate
m_WhichCSeq_entry_Infoprotected
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
OnlyGiAnnotIds(void) constCTSE_Infoinline
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CTSE_Info &)CTSE_Infoprivate
CSeq_entry_Info::operator=(const CSeq_entry_Info &)CSeq_entry_Infoprotected
CObject::operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveAnnot(CRef< CSeq_annot_Info > annot)CSeq_entry_Info
RemoveEntry(CRef< CSeq_entry_Info > entry)CSeq_entry_Info
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
RemoveSeqdesc(const CSeqdesc &d)CSeq_entry_Info
ReplaceSeqdesc(const CSeqdesc &old_desc, CSeqdesc &new_desc)CSeq_entry_Info
Reset(void)CSeq_entry_Info
ResetBlobState(TBlobState state=CBioseq_Handle::fState_none)CTSE_Infoinline
ResetDescr(void)CSeq_entry_Info
SelectSeq(TSeq &seq)CSeq_entry_Info
SelectSeq(CBioseq &seq)CSeq_entry_Info
SelectSet(void)CSeq_entry_Info
SelectSet(TSet &seqset)CSeq_entry_Info
SelectSet(CBioseq_set &seqset)CSeq_entry_Info
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetBioObjectId(const CBioObjectId &id)CTSE_Info_Objectvirtual
SetBioseqUpdater(CRef< CBioseqUpdater > updater)CTSE_Info
SetBlobState(TBlobState state)CTSE_Infoinline
SetBlobVersion(TBlobVersion version)CTSE_Info
SetDescr(TDescr &v)CSeq_entry_Info
SetDescr(void)CSeq_entry_Info
SetName(const CAnnotName &name)CTSE_Info
SetRequestedId(const CSeq_id_Handle &requested_id) constCTSE_Infoinline
SetSeq(void)CSeq_entry_Info
SetSeq_entry(CSeq_entry &entry, CTSE_SetObjectInfo *set_info=0)CTSE_Info
SetSet(void)CSeq_entry_Info
SetTopLevelObject(ETopLevelObjectType type, CSerialObject *ptr)CTSE_Info
SetTopLevelObjectType(ETopLevelObjectType type)CTSE_Info
SetTopLevelSubmit_block() constCTSE_Info
SetTopLevelSubmit_block(CSubmit_block &sub) constCTSE_Info
SetUsedMemory(size_t size)CTSE_Info
sm_DumpEnabledCDebugDumpableprivatestatic
sx_ShallowCopy(TObject &obj)CSeq_entry_Infoprotectedstatic
TAnnot typedefCSeq_entry_Info
TAnnotIdsFlags typedefCTSE_Infoprivate
TAnnotLock typedefCTSE_Info
TAnnotLockReadGuard typedefCTSE_Info
TAnnotLockWriteGuard typedefCTSE_Info
TAnnotObjects typedefCTSE_Info
TAnnotObjs typedefCTSE_Info
TAnnotSet typedefCTSE_Info
TBioObjects typedefCTSE_Infoprivate
TBioseq_sets typedefCTSE_Info
TBioseqInfo typedefCTSE_Info
TBioseqs typedefCTSE_Info
TBioseqsIds typedefCTSE_Info
TBlobId typedefCTSE_Info
TBlobOrder typedefCTSE_Info
TBlobState typedefCTSE_Info
TBlobVersion typedefCTSE_Info
TChunkId typedefCTSE_Info_Object
TChunkIds typedefCTSE_Info_Object
TCount typedefCObject
TCounter typedefCObject
TDesc_CI typedefCSeq_entry_Info
TDescr typedefCSeq_entry_Info
TDescTypeMask typedefCSeq_entry_Info
TFeatId typedefCTSE_Info
TFeatIdIndex typedefCTSE_Info
TFeatIdInt typedefCTSE_Info
TFeatIdStr typedefCTSE_Info
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TIdAnnotInfoMap typedefCTSE_Info
TLockerType typedefCObject
TLocusIndex typedefCTSE_Info
TLocusKey typedefCTSE_Info
TNamedAnnotObjs typedefCTSE_Info
TNames typedefCTSE_Info
TNeedUpdateFlags typedefCTSE_Info_Object
TObject typedefCSeq_entry_Info
TObjectCopyMap typedefCTSE_Info_Object
TParent typedefCTSE_Infoprivate
TRange typedefCTSE_Info
TRangeMap typedefCTSE_Info
TSeq typedefCSeq_entry_Info
TSeq_annot_Lock typedefCTSE_Info
TSeq_feat_Lock typedefCTSE_Info
TSeqIds typedefCTSE_Info
TSet typedefCSeq_entry_Info
TSNPSet typedefCTSE_Info
TTSE_Cache typedefCTSE_Infoprivate
UpdateAnnotIndex(const CSeq_id_Handle &id) constCTSE_Info
UpdateAnnotIndex(void) constCTSE_Info
UpdateAnnotIndex(const CTSE_Info_Object &object) constCTSE_Info
UpdateAnnotIndex(void)CTSE_Info
UpdateAnnotIndex(CTSE_Info_Object &object)CTSE_Info
UpdateFeatIdIndex(CSeqFeatData::E_Choice type, EFeatIdType id_type) constCTSE_Info
UpdateFeatIdIndex(CSeqFeatData::ESubtype subtype, EFeatIdType id_type) constCTSE_Info
Which(void) constCSeq_entry_Info
x_AddAllFeaturesById(TAnnotObjects &objects, TFeatIdInt id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_AddAllFeaturesById(TAnnotObjects &objects, const TFeatIdStr &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_AddFeaturesById(TAnnotObjects &objects, const SFeatIdIndex &index, TFeatIdInt id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_AddFeaturesById(TAnnotObjects &objects, CSeqFeatData::ESubtype subtype, TFeatIdInt id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_AddFeaturesById(TAnnotObjects &objects, const SFeatIdIndex &index, const TFeatIdStr &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_AddFeaturesById(TAnnotObjects &objects, CSeqFeatData::ESubtype subtype, const TFeatIdStr &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_AttachContents(void)CSeq_entry_Infoprotected
x_AttachObject(CTSE_Info_Object &object)CTSE_Info_Objectprotected
x_BaseParentAttach(CTSE_Info_Object &parent)CTSE_Info_Objectprotected
x_BaseParentDetach(CTSE_Info_Object &parent)CTSE_Info_Objectprotected
x_CheckWhich(E_Choice which) constCSeq_entry_Info
x_DetachContents(void)CSeq_entry_Infoprotected
x_DetachObject(CTSE_Info_Object &object)CTSE_Info_Objectprotected
x_DirtyAnnotIndex(void) constCTSE_Info_Objectinline
x_DoUpdate(TNeedUpdateFlags flags)CTSE_Infoprivatevirtual
x_DSAttach(CDataSource &ds)CTSE_Info_Object
x_DSAttachContents(CDataSource &ds)CTSE_Infovirtual
x_DSDetach(CDataSource &ds)CTSE_Info_Object
x_DSDetachContents(CDataSource &ds)CTSE_Infovirtual
x_DSMapObject(CConstRef< TObject > obj, CDataSource &ds)CTSE_Infoprivate
x_DSUnmapObject(CConstRef< TObject > obj, CDataSource &ds)CTSE_Infoprivate
x_FindBioObject(const CBioObjectId &uniq_id) constCTSE_Info
x_FindSeq_feat(const CSeq_id_Handle &loc_id, TSeqPos loc_pos, const CSeq_feat &feat) constCTSE_Info
x_GetAnnotIds(TSeqIds &ids) constCSeq_entry_Info
x_GetAnnotObjs(const CAnnotName &name) constCTSE_Infoprivate
x_GetBaseInfo(void) constCSeq_entry_Info
x_GetBioseq(const CSeq_id_Handle &id)CTSE_Info
x_GetBioseq_set(int id)CTSE_Info
x_GetBioseqsIds(TSeqIds &ids) constCSeq_entry_Info
x_GetFeatIdIndexInt(CSeqFeatData::ESubtype type)CTSE_Info
x_GetFeatIdIndexStr(CSeqFeatData::ESubtype type)CTSE_Info
x_GetFeaturesById(CSeqFeatData::E_Choice type, TFeatIdInt id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFeaturesById(CSeqFeatData::ESubtype subtype, TFeatIdInt id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFeaturesById(CSeqFeatData::E_Choice type, const TFeatIdStr &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFeaturesById(CSeqFeatData::ESubtype subtype, const TFeatIdStr &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFeaturesById(CSeqFeatData::E_Choice type, const TFeatId &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFeaturesById(CSeqFeatData::ESubtype subtype, const TFeatId &id, EFeatIdType id_type, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFeaturesByLocus(const string &locus, bool tag, const CSeq_annot_Info *src_annot=0) constCTSE_Info
x_GetFirstDesc(TDescTypeMask types) constCSeq_entry_Info
x_GetIdObjects(const TAnnotObjs &objs, const CSeq_id_Handle &idh) constCTSE_Infoprivate
x_GetIdObjects(const CAnnotName &name, const CSeq_id_Handle &id) constCTSE_Infoprivate
x_GetNextDesc(TDesc_CI iter, TDescTypeMask types) constCSeq_entry_Info
x_GetObject(void)CSeq_entry_Infoprotected
x_GetObject(void) constCSeq_entry_Infoprotected
x_GetRecords(const CSeq_id_Handle &id, bool bioseq) constCTSE_Info
x_GetSNP_Info(const CConstRef< CSeq_annot > &annot)CTSE_Infoprivate
x_GetTopLevelSeq_submit() constCTSE_Info
x_GetUnnamedAnnotObjs(void) constCTSE_Infoprivate
x_GetUnnamedIdObjects(const CSeq_id_Handle &id) constCTSE_Infoprivate
x_HasFeaturesWithId(CSeqFeatData::ESubtype subtype) constCTSE_Info
x_HasIdObjects(const CSeq_id_Handle &id) constCTSE_Infoprivate
x_IndexAnnotTSE(const CAnnotName &name, const CSeq_id_Handle &id)CTSE_Infoprivate
x_IndexBioseq(CBioseq_Info *)CTSE_Infoprivate
x_IndexBioseq_set(CBioseq_set_Info *)CTSE_Infoprivate
x_IndexSeqTSE(const CSeq_id_Handle &id)CTSE_Infoinlineprivate
x_Initialize(void)CTSE_Infoprivate
x_IsEndDesc(TDesc_CI iter) constCSeq_entry_Info
x_LoadChunk(TChunkId chunk_id) constCTSE_Info
x_LoadChunks(const TChunkIds &chunk_ids) constCTSE_Info
x_LoadDelayedMainChunk(void) constCTSE_Info
x_MapAnnotObject(TRangeMap &rangeMap, const SAnnotObject_Key &key, const SAnnotObject_Index &index)CTSE_Infoinlineprivate
x_MapAnnotObject(SIdAnnotObjs &objs, const SAnnotObject_Key &key, const SAnnotObject_Index &index)CTSE_Infoprivate
x_MapAnnotObject(TAnnotObjs &objs, const CAnnotName &name, const SAnnotObject_Key &key, const SAnnotObject_Index &index)CTSE_Infoprivate
x_MapAnnotObject(const CAnnotName &name, const SAnnotObject_Key &key, const SAnnotObject_Index &index)CTSE_Infoprivate
x_MapChunkByFeatId(TFeatIdInt id, CSeqFeatData::ESubtype subtype, TChunkId chunk_id, EFeatIdType type)CTSE_Infoprivate
x_MapChunkByFeatId(TFeatIdInt id, CSeqFeatData::E_Choice type, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(TFeatIdInt id, const SAnnotTypeSelector &type, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(const TFeatIdStr &id, CSeqFeatData::ESubtype subtype, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(const TFeatIdStr &id, CSeqFeatData::E_Choice type, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(const TFeatIdStr &id, const SAnnotTypeSelector &type, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(const TFeatId &id, CSeqFeatData::ESubtype subtype, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(const TFeatId &id, CSeqFeatData::E_Choice type, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatId(const TFeatId &id, const SAnnotTypeSelector &type, TChunkId chunk_id, EFeatIdType id_type)CTSE_Infoprivate
x_MapChunkByFeatType(CSeqFeatData::ESubtype subtype, TChunkId chunk_id)CTSE_Infoprivate
x_MapChunkByFeatType(CSeqFeatData::E_Choice type, TChunkId chunk_id)CTSE_Infoprivate
x_MapChunkByFeatType(const SAnnotTypeSelector &type, TChunkId chunk_id)CTSE_Infoprivate
x_MapFeatById(TFeatIdInt id, CAnnotObject_Info &info, EFeatIdType type)CTSE_Infoprivate
x_MapFeatById(const TFeatIdStr &id, CAnnotObject_Info &info, EFeatIdType type)CTSE_Infoprivate
x_MapFeatById(const TFeatId &id, CAnnotObject_Info &info, EFeatIdType type)CTSE_Infoprivate
x_MapFeatByLocus(const string &locus, bool tag, CAnnotObject_Info &info)CTSE_Infoprivate
x_MapSNP_Table(const CAnnotName &name, const CSeq_id_Handle &key, const CSeq_annot_SNP_Info &snp_info)CTSE_Infoprivate
x_NeedsDelayedMainChunk(void) constCTSE_Info
x_NeedUpdate(ENeedUpdate flag) constCTSE_Info_Objectinline
x_ParentAttach(CBioseq_set_Info &parent)CSeq_entry_Info
x_ParentDetach(CBioseq_set_Info &parent)CSeq_entry_Info
x_RegisterBioObject(CTSE_Info_Object &info)CTSE_Infoprivate
x_RemoveAnnotObjs(const CAnnotName &name)CTSE_Infoprivate
x_Reset(void)CTSE_Infoprivate
x_ResetBioseq_setId(int key, CBioseq_set_Info *info)CTSE_Infoprivate
x_ResetBioseqId(const CSeq_id_Handle &id, CBioseq_Info *info)CTSE_Infoprivate
x_ResetDirtyAnnotIndex(void)CTSE_Info_Object
x_ResetDirtyAnnotIndexNoParent(void)CTSE_Infovirtual
x_Select(CSeq_entry::E_Choice which, CBioseq_Base_Info *contents)CSeq_entry_Infoinlineprotected
x_Select(CSeq_entry::E_Choice which, CRef< CBioseq_Base_Info > contents)CSeq_entry_Infoprotected
x_SetAnnotObjs(const CAnnotName &name)CTSE_Infoprivate
x_SetBioseq_setId(int key, CBioseq_set_Info *info)CTSE_Infoprivate
x_SetBioseqChunkId(TChunkId chunk_id)CSeq_entry_Info
x_SetBioseqId(const CSeq_id_Handle &id, CBioseq_Info *info)CTSE_Infoprivate
x_SetBioseqIds(CBioseq_Info *info)CTSE_Infoprivate
x_SetDirtyAnnotIndex(void)CTSE_Info_Object
x_SetDirtyAnnotIndexNoParent(void)CTSE_Infovirtual
x_SetIdObjects(TAnnotObjs &objs, const CAnnotName &name, const CSeq_id_Handle &id)CTSE_Infoprivate
x_SetIdObjects(const CAnnotName &name, const CSeq_id_Handle &idh)CTSE_Infoprivate
x_SetNeedUpdate(TNeedUpdateFlags flags)CTSE_Info_Object
x_SetNeedUpdateContents(TNeedUpdateFlags flags)CSeq_entry_Infoprotected
x_SetNeedUpdateParent(TNeedUpdateFlags flags)CTSE_Info_Objectvirtual
x_SetObject(TObject &obj)CSeq_entry_Infoprotected
x_SetObject(const CSeq_entry_Info &info, TObjectCopyMap *copy_map)CSeq_entry_Infoprotected
x_SetParentDirtyAnnotIndex(void)CTSE_Info_Object
x_TSEAttach(CTSE_Info &tse)CTSE_Info_Object
x_TSEAttachContents(CTSE_Info &tse_info)CSeq_entry_Infovirtual
x_TSEDetach(CTSE_Info &tse)CTSE_Info_Object
x_TSEDetachContents(CTSE_Info &tse_info)CSeq_entry_Infovirtual
x_UnindexAnnotTSE(const CAnnotName &name, const CSeq_id_Handle &id)CTSE_Infoprivate
x_UnindexSeqTSE(const CSeq_id_Handle &id)CTSE_Infoinlineprivate
x_UnmapAnnotObject(TRangeMap &rangeMap, const CAnnotObject_Info &info, const SAnnotObject_Key &key)CTSE_Infoinlineprivate
x_UnmapAnnotObject(SIdAnnotObjs &objs, const CAnnotObject_Info &info, const SAnnotObject_Key &key)CTSE_Infoprivate
x_UnmapAnnotObject(TAnnotObjs &objs, const CAnnotName &name, const CAnnotObject_Info &info, const SAnnotObject_Key &key)CTSE_Infoprivate
x_UnmapAnnotObject(const CAnnotName &name, const CAnnotObject_Info &info, const SAnnotObject_Key &key)CTSE_Infoprivate
x_UnmapAnnotObjects(const SAnnotObjectsIndex &infos)CTSE_Infoprivate
x_UnmapFeatById(TFeatIdInt id, CAnnotObject_Info &info, EFeatIdType type)CTSE_Infoprivate
x_UnmapFeatById(const TFeatIdStr &id, CAnnotObject_Info &info, EFeatIdType type)CTSE_Infoprivate
x_UnmapFeatById(const TFeatId &id, CAnnotObject_Info &info, EFeatIdType type)CTSE_Infoprivate
x_UnmapFeatByLocus(const string &locus, bool tag, CAnnotObject_Info &info)CTSE_Infoprivate
x_UnmapSNP_Table(const CAnnotName &name, const CSeq_id_Handle &key, const CSeq_annot_SNP_Info &snp_info)CTSE_Infoprivate
x_UnregisterBioObject(CTSE_Info_Object &info)CTSE_Infoprivate
x_Update(TNeedUpdateFlags flags) constCSeq_entry_Infoprotected
x_UpdateAnnotIndex(CTSE_Info &tse)CTSE_Info_Object
x_UpdateAnnotIndexContents(CTSE_Info &tse)CTSE_Infovirtual
x_UpdateComplete(void) constCTSE_Info_Object
x_UpdateCore(void) constCTSE_Info_Object
x_UpdateSkeleton() constCSeq_entry_Infoinlineprotected
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
~CSeq_entry_Info(void)CSeq_entry_Infovirtual
~CTSE_Info(void)CTSE_Infovirtual
~CTSE_Info_Object(void)CTSE_Info_Objectvirtual
Modified on Thu Feb 22 17:07:46 2024 by modify_doxy.py rev. 669887