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CTableDataBioTreeContainer Class Reference

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+ Inheritance diagram for CTableDataBioTreeContainer:
+ Collaboration diagram for CTableDataBioTreeContainer:

Classes

struct  ColInfo
 

Public Member Functions

virtual void LoadData ()
 
virtual ColumnType GetColumnType (size_t col) const
 
virtual string GetColumnLabel (size_t col) const
 
virtual size_t GetRowsCount () const
 
virtual size_t GetColsCount () const
 
virtual void GetStringValue (size_t row, size_t col, string &value) const
 
virtual long GetIntValue (size_t row, size_t col) const
 
virtual double GetRealValue (size_t row, size_t col) const
 
virtual SConstScopedObject GetObjectValue (size_t row, size_t col) const
 
CRef< CScopeGetScope ()
 
CConstRef< CNodeGetNode (size_t row) const
 
int FindRow (int nodeId) const
 
void SelectSeqIds (const CSelectionEvent::TIds &ids, CFeatureDescr::TId seqidFeatId, vector< size_t > &selectedNodes) const
 
void SelectTaxIds (const CSelectionEvent::TTaxIds &tids, CFeatureDescr::TId taxidFeatId, vector< size_t > &selectedNodes) const
 
void SelectFeatures (const CBioTreeSelection &selection, CFeatureDescr::TId srcFeatId, CFeatureDescr::TId dstFeatId, vector< size_t > &selectedNodes) const
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from CTableDataBase
virtual string GetTableTypeId () const
 
- Public Member Functions inherited from ITableData
virtual ~ITableData ()
 
virtual bool IsHtmlColumn (size_t col) const
 
virtual string GetRowLabel (size_t) const
 
virtual vector< stringGetColumnCommonStrings (size_t) const
 
virtual vector< vector< char > * > GetColumnCommonBytes (size_t) const
 
virtual string GetHtmlValue (size_t, size_t) const
 
virtual SConstScopedObject GetRowObject (size_t) const
 
virtual void SetStringValue (size_t, size_t, const string &)
 
virtual void SetIntValue (size_t, size_t, long)
 
virtual void SetRealValue (size_t, size_t, double)
 
virtual void SetObjectValue (size_t, size_t, SConstScopedObject *)
 
virtual bool AllowEdit (size_t)
 

Static Public Member Functions

static CTableDataBioTreeContainerCreateObject (SConstScopedObject &object, ICreateParams *params)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Types

typedef map< CNode::TId, size_t > TNodeIdRowMap
 

Private Member Functions

void Init ()
 
string x_GetNodeFeature (int feature_id, const CNode &node) const
 

Private Attributes

CConstRef< CObjectm_Object
 
CRef< objects::CScope > m_Scope
 
vector< pair< int, ColInfo > > m_FeatureDescr
 
vector< CRef< CNode > > m_Nodes
 
TNodeIdRowMap m_NodeIdRows
 

Friends

class CTableSelectionBioTreeContainer
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Public Types inherited from ITableData
enum  ColumnType {
  kNone , kInt , kReal , kString ,
  kBytes , kCommonString , kCommonBytes , kObject
}
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 59 of file table_data_biotreecontainer.cpp.

Member Typedef Documentation

◆ TNodeIdRowMap

Definition at line 104 of file table_data_biotreecontainer.cpp.

Member Function Documentation

◆ CreateObject()

CTableDataBioTreeContainer * CTableDataBioTreeContainer::CreateObject ( SConstScopedObject object,
ICreateParams params 
)
static

Definition at line 172 of file table_data_biotreecontainer.cpp.

References Init(), m_Object, and m_Scope.

◆ FindRow()

int CTableDataBioTreeContainer::FindRow ( int  nodeId) const

◆ GetColsCount()

size_t CTableDataBioTreeContainer::GetColsCount ( ) const
virtual

Implements ITableData.

Definition at line 280 of file table_data_biotreecontainer.cpp.

References m_FeatureDescr.

◆ GetColumnLabel()

string CTableDataBioTreeContainer::GetColumnLabel ( size_t  col) const
virtual

Implements ITableData.

Definition at line 262 of file table_data_biotreecontainer.cpp.

References m_FeatureDescr.

◆ GetColumnType()

ITableData::ColumnType CTableDataBioTreeContainer::GetColumnType ( size_t  col) const
virtual

Implements ITableData.

Definition at line 251 of file table_data_biotreecontainer.cpp.

References ITableData::kInt, ITableData::kNone, and m_FeatureDescr.

◆ GetIntValue()

long CTableDataBioTreeContainer::GetIntValue ( size_t  row,
size_t  col 
) const
virtual

◆ GetNode()

CConstRef< CNode > CTableDataBioTreeContainer::GetNode ( size_t  row) const

Definition at line 436 of file table_data_biotreecontainer.cpp.

References m_Nodes, and row.

Referenced by CTableSelectionBioTreeContainer::GetSelection().

◆ GetObjectValue()

SConstScopedObject CTableDataBioTreeContainer::GetObjectValue ( size_t  row,
size_t  col 
) const
virtual

◆ GetRealValue()

double CTableDataBioTreeContainer::GetRealValue ( size_t  row,
size_t  col 
) const
virtual

◆ GetRowsCount()

size_t CTableDataBioTreeContainer::GetRowsCount ( ) const
virtual

Implements ITableData.

Definition at line 275 of file table_data_biotreecontainer.cpp.

References m_Nodes.

◆ GetScope()

CRef<CScope> CTableDataBioTreeContainer::GetScope ( void  )
inline

Definition at line 77 of file table_data_biotreecontainer.cpp.

References m_Scope.

◆ GetStringValue()

void CTableDataBioTreeContainer::GetStringValue ( size_t  row,
size_t  col,
string value 
) const
virtual

◆ Init()

void CTableDataBioTreeContainer::Init ( void  )
private

◆ LoadData()

virtual void CTableDataBioTreeContainer::LoadData ( void  )
inlinevirtual

Definition at line 66 of file table_data_biotreecontainer.cpp.

◆ SelectFeatures()

void CTableDataBioTreeContainer::SelectFeatures ( const CBioTreeSelection selection,
CFeatureDescr::TId  srcFeatId,
CFeatureDescr::TId  dstFeatId,
vector< size_t > &  selectedNodes 
) const

◆ SelectSeqIds()

void CTableDataBioTreeContainer::SelectSeqIds ( const CSelectionEvent::TIds ids,
CFeatureDescr::TId  seqidFeatId,
vector< size_t > &  selectedNodes 
) const

◆ SelectTaxIds()

void CTableDataBioTreeContainer::SelectTaxIds ( const CSelectionEvent::TTaxIds tids,
CFeatureDescr::TId  taxidFeatId,
vector< size_t > &  selectedNodes 
) const

◆ x_GetNodeFeature()

string CTableDataBioTreeContainer::x_GetNodeFeature ( int  feature_id,
const CNode node 
) const
private

Friends And Related Function Documentation

◆ CTableSelectionBioTreeContainer

friend class CTableSelectionBioTreeContainer
friend

Definition at line 64 of file table_data_biotreecontainer.cpp.

Member Data Documentation

◆ m_FeatureDescr

vector<pair<int, ColInfo> > CTableDataBioTreeContainer::m_FeatureDescr
private

◆ m_NodeIdRows

TNodeIdRowMap CTableDataBioTreeContainer::m_NodeIdRows
private

Definition at line 105 of file table_data_biotreecontainer.cpp.

Referenced by FindRow(), and Init().

◆ m_Nodes

vector<CRef<CNode> > CTableDataBioTreeContainer::m_Nodes
private

◆ m_Object

CConstRef<CObject> CTableDataBioTreeContainer::m_Object
private

◆ m_Scope

CRef<objects::CScope> CTableDataBioTreeContainer::m_Scope
mutableprivate

Definition at line 101 of file table_data_biotreecontainer.cpp.

Referenced by CreateObject(), GetObjectValue(), and GetScope().


The documentation for this class was generated from the following file:
Modified on Sun Apr 21 03:43:43 2024 by modify_doxy.py rev. 669887