NCBI C++ ToolKit
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CTestMapperSeqInfo Class Reference

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+ Inheritance diagram for CTestMapperSeqInfo:
+ Collaboration diagram for CTestMapperSeqInfo:

Public Member Functions

 CTestMapperSeqInfo (void)
 
virtual TSeqType GetSequenceType (const CSeq_id_Handle &idh)
 Get information about sequence type (nuc or prot). More...
 
virtual TSeqPos GetSequenceLength (const CSeq_id_Handle &idh)
 Get sequence length or kInvalidSeqPos. More...
 
virtual void CollectSynonyms (const CSeq_id_Handle &id, TSynonyms &synonyms)
 Collect all synonyms for the id including the id itself. More...
 
void AddSeq (TGi gi, TSeqType seqtype, TSeqPos len)
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef map< TGi, TSeqTypeTTypeMap
 
typedef map< TGi, TSeqPosTLenMap
 

Private Attributes

TTypeMap m_Types
 
TLenMap m_Lengths
 

Additional Inherited Members

- Public Types inherited from IMapper_Sequence_Info
typedef CSeq_loc_Mapper_Base::ESeqType TSeqType
 
typedef CSeq_loc_Mapper_Base::TSynonyms TSynonyms
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 788 of file mapper_unit_test.cpp.

Member Typedef Documentation

◆ TLenMap

Definition at line 820 of file mapper_unit_test.cpp.

◆ TTypeMap

Definition at line 819 of file mapper_unit_test.cpp.

Constructor & Destructor Documentation

◆ CTestMapperSeqInfo()

CTestMapperSeqInfo::CTestMapperSeqInfo ( void  )
inline

Definition at line 791 of file mapper_unit_test.cpp.

Member Function Documentation

◆ AddSeq()

void CTestMapperSeqInfo::AddSeq ( TGi  gi,
TSeqType  seqtype,
TSeqPos  len 
)
inline

Definition at line 812 of file mapper_unit_test.cpp.

References len, m_Lengths, and m_Types.

◆ CollectSynonyms()

virtual void CTestMapperSeqInfo::CollectSynonyms ( const CSeq_id_Handle id,
TSynonyms synonyms 
)
inlinevirtual

Collect all synonyms for the id including the id itself.

Any derived class must add at least the original id to the collection.

Implements IMapper_Sequence_Info.

Definition at line 806 of file mapper_unit_test.cpp.

References set< Key, Compare >::insert().

◆ GetSequenceLength()

virtual TSeqPos CTestMapperSeqInfo::GetSequenceLength ( const CSeq_id_Handle idh)
inlinevirtual

◆ GetSequenceType()

virtual TSeqType CTestMapperSeqInfo::GetSequenceType ( const CSeq_id_Handle idh)
inlinevirtual

Member Data Documentation

◆ m_Lengths

TLenMap CTestMapperSeqInfo::m_Lengths
private

Definition at line 823 of file mapper_unit_test.cpp.

Referenced by AddSeq(), and GetSequenceLength().

◆ m_Types

TTypeMap CTestMapperSeqInfo::m_Types
private

Definition at line 822 of file mapper_unit_test.cpp.

Referenced by AddSeq(), and GetSequenceType().


The documentation for this class was generated from the following file:
Modified on Thu Feb 29 12:23:13 2024 by modify_doxy.py rev. 669887