Search Toolkit Book for CTestSeqBasedMethod

#include <gui/widgets/aln_score/simple_methods.hpp>

Inheritance diagram for CTestSeqBasedMethod:

Collaboration diagram for CTestSeqBasedMethod:

Public Member Functions
	CTestSeqBasedMethod ()
	CTestSeqBasedMethod. More...

virtual IUITool *	Clone () const

void	CreateColorTable ()

virtual string	GetName () const
	returns unique name of the method that is used in UI to identify it More...

virtual string	GetDescription () const
	returns a detailed description of the method that is used in UI More...

int	GetType () const
	returns combination of EAlignType flags defining types of alignments that can be colored with this method More...

virtual bool	IsAverageable () const
	return "true" if scores could be averaged More...

virtual int	GetSupportedColorTypes () const
	returns a combination of EColorType flags More...

virtual void	CalculateScores (IAlnExplorer::TNumrow row, const IScoringAlignment &aln, TScoreColl &scores)

virtual const CRgbaColor &	GetColorForScore (TScore score, EColorType type) const
	returns a color corresponding to a given score value. More...

virtual const CRgbaColor &	GetColorForNoScore (IScoringMethod::EColorType type) const
	Call for display colors when CanCalculateScores returns false. More...

virtual void	SetColorForNoScore (IScoringMethod::EColorType type, const CRgbaColor &color)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Member Functions inherited from IScoringMethod
virtual	~IScoringMethod ()

Public Member Functions inherited from IUITool
virtual	~IUITool ()

Public Member Functions inherited from IRowScoringMethod
virtual	~IRowScoringMethod ()

Protected Attributes
vector< CRgbaColor >	m_vColors

CRgbaColor	m_NoScoreColor

Additional Inherited Members
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Types inherited from IScoringMethod
enum	EColorType { fBackground = 0x1 , fForeground = 0x2 }

typedef float	TScore

typedef vector< TScore >	TScoreVector

typedef CAttrRangeCollection< TScore, TSeqPos >	TScoreColl

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Member Functions inherited from IScoringMethod
static const char *	GetAlignmentTagByType (IAlnExplorer::EAlignType type)
	returns symbolic label for the given alignment type, should be More...

static IAlnExplorer::EAlignType	GetAlignmentTypeByTag (const string &tag)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Static Public Attributes inherited from IScoringMethod
static const int	sm_DefGradientSize = 32
	default number of colors in gradient More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...