Search Toolkit Book for CTreeGraphicsModel

class CTreeGraphicsModel Model for rendering tree graphics data. More...

#include <gui/widgets/phylo_tree/tree_graphics_model.hpp>

Inheritance diagram for CTreeGraphicsModel:

Collaboration diagram for CTreeGraphicsModel:

Public Member Functions
	CTreeGraphicsModel ()

virtual	~CTreeGraphicsModel ()

void	Init (CPhyloTree *t)
	Allocate any default buffers etc. More...

CGlVboNode *	AddTempCollapsedNode (const vector< CVect2< float > > &vb)
	Return a node that can be used to represent a collapsed tree. More...

virtual void	Render (CGlPane &pane)
	Draw all the nodes. More...

virtual void	RenderPDF (CGlPane &pane, CRef< CPdf > &pdf)
	Draw to PDF file. More...

virtual void	SyncBuffers ()
	Update buffers as needed. More...

virtual void	ClearArrays ()
	Clear arrays prior to re-synching with the model. More...

void	EnableCircularLabelTrimming (const CVect2< float > &cladogram_center)
	Called for circular layout - enables trimming of non-rotated labels based on proximity to adjacent leaf nodes in the circle. More...

float	GetCurrentRotationAngle (const CGlPane &pane, const CPhyloTreeNode &n, bool &visible) const
	Return node's label rotation angle for current zoom level. More...

void	SetScheme (CPhyloTreeScheme &sl)
	Set rendering scheme for tree (some nodes need this to render) More...

CPhyloTree *	GetTree ()
	Get the tree (to which the node indices belong) More...

vector< size_t > &	GetNodeIndices ()
	Get all the nodes (indicies point to nodes in phylo tree) More...

CRgbaGradColorTable *	GetColorTable ()
	Get color table used a 1D texture map for edges and nodes. More...

CTreeBoundaryNode *	GetBoundaryNode ()

CTreeTriFanNode *	GetTriFanNode ()

CTreeCollisionModel2D &	GetCollisionData ()

const CTreeCollisionModel2D &	GetCollisionData () const

void	SetRotateLabels (bool b)

bool	GetRotateLabels () const

void	SetRenderTooltips (bool b)

bool	GetRenderTooltips () const

Public Member Functions inherited from CGlModel2D
	CGlModel2D ()

virtual	~CGlModel2D ()

virtual void	ClearAll ()
	clear everything - vectors and vertex buffers More...

CGlVboNode *	FindGeomNode (const string &name)
	Find a geometry (vertex buffer object) node by name. More...

CGlVboNode *	AddGeomNode (GLenum node_type, const string &name, bool visible=true)
	Add a geometry (vertex buffer object) node. More...

CGlVboNode *	AddGeomNode (GLenum node_type, const string &name, size_t idx, bool visible=true)
	Same as above, but insert node before specified index. More...

CGlVboNode *	AddGeomNode (const string &name, bool visible=true)
	Add a geometry node of unspecified type (caller will have to allocate appropriate buffer type for the node) More...

CGlVboNode *	AddGeomNode (const string &name, size_t idx, bool visible=true)
	Same as above, but insert node before specified index. More...

vector< CGlVboNode * > &	GetNodes ()

CIRef< IVboGeom >	FindGeomObject (const string &name)
	Find a geometry object (just geometry - not a render node) by name. More...

CIRef< IVboGeom >	AddGeomObject (GLenum node_type, const string &name)
	Add a geometry (vertex buffer object) node. More...

vector< CIRef< IVboGeom > > &	GetGeomObjects ()

CGlVboNode *	AddTempGeomNode (const string &name, bool visible=true)
	Add a geometry node of unspecified type (caller will have to allocate appropriate buffer type for the node) More...

CGlVboNode *	AddTempGeomNode (GLenum node_type, const string &name, bool visible=true)

vector< CGlVboNode * > &	GetTempNodes ()

Public Member Functions inherited from CGlObject
	CGlObject ()

	CGlObject (const string &name)

void	SetName (const string &name)

string	GetName () const

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Attributes
float	m_RenderTime

float	m_LineRenderTime

float	m_NodesRenderTime

float	m_BoundaryRenderTime

int	m_NodeRenderCount

float	m_TotalTime

float	m_CDUpdateTime

Protected Member Functions
void	x_RenderNodes (CGlPane &pane, const CVect3< float > &scale)

void	x_RenderNodeLabelsPdf (CGlPane &pane, CRef< CPdf > &pdf, CVect3< float > scale)

void	x_RenderNodesPdf (CGlPane &pane, CRef< CPdf > &pdf, CVect3< float > scale)

void	x_RenderBoundariesPdf (CGlPane &pane, CRef< CPdf > &pdf, const CVect3< float > &scale)

CVect2< float >	x_Project (CVect2< float > &p)

void	x_CircularLabelTrim (const CGlPane &pane, const CVect3< float > &scale, CPhyloTreeNode &n, bool truncate_labels)

void	x_CircularLabelMinRotate (const CGlPane &pane, const CVect3< float > &scale, CPhyloTreeNode &n, bool truncate_labels)

float	x_CircularLabelMinAngle (const CGlPane &pane, const CVect3< float > &scale, const CPhyloTreeNode &n, bool &visible) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Attributes
CTreeCollisionModel2D	m_CollisionData

vector< size_t >	m_NodeIndices

CTreeBoundaryNode *	m_BoundaryNode

CTreeTriFanNode *	m_TriFanNode

CPhyloTree *	m_Tree

CRef< CPhyloTreeScheme >	m_SL

CRef< CRgbaGradColorTable >	m_ColorTable

bool	m_RotateLabels

bool	m_RenderPdfTooltips

CIRef< I3DTexture >	m_CollapseTexture

bool	m_EnableCircularLabelTrimming
	These are specialized for rendering circular cladograms. More...

CVect2< float >	m_CladogramCenter

float	m_DeltaTheta

Protected Attributes inherited from CGlModel2D
GLint	m_Viewport [4]
	For gluProject() More...

GLdouble	m_ModelviewMatrix [16]

GLdouble	m_ProjectionMatrix [16]

vector< CGlVboNode * >	m_GeomNodes
	Set of rendernodes with vertex buffer objects. More...

vector< CIRef< IVboGeom > >	m_GeomObjects
	Geometry to use in nodes (can be shared between nodes) More...

vector< CGlVboNode * >	m_TempGeomNodes
	Set of single-use rendernodes (which may use geom from m_Geom) These are deleted when ClearArrays is called. More...

Protected Attributes inherited from CGlObject
string	m_Name
	Object name. More...

Additional Inherited Members
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Detailed Description

class CTreeGraphicsModel Model for rendering tree graphics data.

Only holds data currently needed to render the model. Actual rendering is all done by objects derived from CGlRenderNode. Where there is a lot to render (nodes, edges) that is done by vertex buffer objects. Where there is less (marker nodes) that may be

For nodes and edges in the model, they are currently first copied to arrays (m_Nodes and m_Edges) prior to rendering. This allows the data to be shared with collision detection.

Definition at line 124 of file tree_graphics_model.hpp.

Constructor & Destructor Documentation

◆ CTreeGraphicsModel()

CTreeGraphicsModel::CTreeGraphicsModel ( )

Definition at line 131 of file tree_graphics_model.cpp.

References CAttribMenu::AddFloatReadOnly(), CAttribMenu::AddIntReadOnly(), CAttribMenu::AddSubMenuUnique(), CAttribMenuInstance::GetInstance(), m_BoundaryRenderTime, m_CDUpdateTime, m_LineRenderTime, m_NodeRenderCount, m_NodesRenderTime, m_RenderTime, and m_TotalTime.

◆ ~CTreeGraphicsModel()

CTreeGraphicsModel::~CTreeGraphicsModel ( )

virtual

Definition at line 157 of file tree_graphics_model.cpp.

References CAttribMenuInstance::GetInstance(), m_BoundaryNode, m_TriFanNode, NULL, and CAttribMenu::RemoveMenuR().

Member Function Documentation

◆ AddTempCollapsedNode()

CGlVboNode * CTreeGraphicsModel::AddTempCollapsedNode ( const vector< CVect2< float > > & vb )

Return a node that can be used to represent a collapsed tree.

Definition at line 327 of file tree_graphics_model.cpp.

References CGlModel2D::AddGeomObject(), CGlModel2D::AddTempGeomNode(), IRender::Begin(), IRender::Color4f(), IRender::Disable(), IRender::End(), CGlModel2D::FindGeomObject(), GetGl(), IRender::GetModelViewMatrix(), CRef< C, Locker >::GetNCPointer(), IRender::GetProjectionMatrix(), CGlResMgr::Instance(), IRender::LoadIdentity(), IRender::LoadMatrixd(), m_CollapseTexture, IRender::MatrixMode(), n, IRender::Ortho(), IRender::PolygonMode(), CRef< C, Locker >::Reset(), IRender::Vertex3f(), and IRender::Viewport().

Referenced by IPhyloTreeRender::x_AddCollapsedTextureNode().

◆ ClearArrays()

void CTreeGraphicsModel::ClearArrays ( )

virtual

Clear arrays prior to re-synching with the model.

Reimplemented from CGlModel2D.

Definition at line 509 of file tree_graphics_model.cpp.

References CTreeBoundaryNode::Clear(), CGlModel2D::ClearArrays(), CGlRenderNode::ClearPositions(), CGlModel2D::FindGeomNode(), m_BoundaryNode, m_EnableCircularLabelTrimming, m_NodeIndices, m_TriFanNode, NULL, and CGlVboNode::SetVertexBuffer2D().

Referenced by IPhyloTreeRender::BufferedRender().

◆ EnableCircularLabelTrimming()

void CTreeGraphicsModel::EnableCircularLabelTrimming ( const CVect2< float > & cladogram_center )

Called for circular layout - enables trimming of non-rotated labels based on proximity to adjacent leaf nodes in the circle.

Definition at line 534 of file tree_graphics_model.cpp.

References CPhyloNodeData::GetNumLeavesEx(), CTreeModel< TNode >::GetRoot(), CTreeModelNode< TData >::GetValue(), m_CladogramCenter, m_DeltaTheta, m_EnableCircularLabelTrimming, and m_Tree.

Referenced by CPhyloCircularCladogram::x_RenderVbo().

◆ GetBoundaryNode()

CTreeBoundaryNode* CTreeGraphicsModel::GetBoundaryNode ( )

inline

Definition at line 170 of file tree_graphics_model.hpp.

References m_BoundaryNode.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ GetCollisionData() [1/2]

CTreeCollisionModel2D& CTreeGraphicsModel::GetCollisionData ( )

inline

Definition at line 173 of file tree_graphics_model.hpp.

References m_CollisionData.

Referenced by CPhyloTreeDataSource::Clean(), IPhyloTreeRender::InitCollisionInfo(), CPhyloTree::SelectByRect(), CPhyloTree::TestForNode(), and IPhyloTreeRender::x_SetElementVisibility().

◆ GetCollisionData() [2/2]

const CTreeCollisionModel2D& CTreeGraphicsModel::GetCollisionData ( ) const

inline

Definition at line 174 of file tree_graphics_model.hpp.

References m_CollisionData.

◆ GetColorTable()

CRgbaGradColorTable* CTreeGraphicsModel::GetColorTable ( )

inline

Get color table used a 1D texture map for edges and nodes.

Definition at line 168 of file tree_graphics_model.hpp.

References CRef< C, Locker >::GetPointer(), and m_ColorTable.

Referenced by IPhyloTreeRender::GetEdgeColor(), CChangePhyloPropertyCmd::PerformEdit(), CPhyloSaveSelectiondlg::SetSelections(), and IPhyloTreeRender::x_RenderNodeVbo().

◆ GetCurrentRotationAngle()

float CTreeGraphicsModel::GetCurrentRotationAngle	(	const CGlPane &	pane,
		const CPhyloTreeNode &	n,
		bool &	visible
	)		const

Return node's label rotation angle for current zoom level.

(Circular view rotates less as you zoom out and that is computed in CTreeGraphicsModel)

Definition at line 740 of file tree_graphics_model.cpp.

References CGlPane::GetScaleX(), CGlPane::GetScaleY(), CPhyloTreeNode::IsLeafEx(), m_EnableCircularLabelTrimming, m_RotateLabels, and x_CircularLabelMinAngle().

Referenced by CPhyloTreeWidget::IterateSelection(), and CTreeCollisionModel2D::UpdateScaled().

◆ GetNodeIndices()

vector<size_t>& CTreeGraphicsModel::GetNodeIndices ( )

inline

Get all the nodes (indicies point to nodes in phylo tree)

Definition at line 165 of file tree_graphics_model.hpp.

References m_NodeIndices.

Referenced by CTreeCollisionModel2D::UpdateScaled(), and IPhyloTreeRender::x_RenderNodeVbo().

◆ GetRenderTooltips()

bool CTreeGraphicsModel::GetRenderTooltips ( ) const

inline

Definition at line 180 of file tree_graphics_model.hpp.

References m_RenderPdfTooltips.

◆ GetRotateLabels()

bool CTreeGraphicsModel::GetRotateLabels ( ) const

inline

Definition at line 177 of file tree_graphics_model.hpp.

References m_RotateLabels.

Referenced by CTreeCollisionModel2D::UpdateScaled(), CTreeCollisionModel2D::UpdateVisibility(), and x_RenderNodeLabelsPdf().

◆ GetTree()

CPhyloTree* CTreeGraphicsModel::GetTree ( void )

inline

Get the tree (to which the node indices belong)

Definition at line 162 of file tree_graphics_model.hpp.

References m_Tree.

Referenced by CTreeCollisionModel2D::SelectNodes(), CTreeCollisionModel2D::TestForNode(), CTreeCollisionModel2D::UpdateScaled(), and CTreeCollisionModel2D::UpdateVisibility().

◆ GetTriFanNode()

CTreeTriFanNode* CTreeGraphicsModel::GetTriFanNode ( )

inline

Definition at line 171 of file tree_graphics_model.hpp.

References m_TriFanNode.

Referenced by IPhyloTreeRender::x_RenderNodeVbo(), and IPhyloTreeRender::x_SetElementVisibility().

◆ Init()

void CTreeGraphicsModel::Init ( CPhyloTree * t )

Allocate any default buffers etc.

Definition at line 171 of file tree_graphics_model.cpp.

References CGlModel2D::AddGeomNode(), CGlState::BlendFunc(), CGlState::ColorC(), CGlState::Disable(), IGlState::eButtCap, IGlState::eMiteredJoin, CGlState::Enable(), eRenderPDF, IGlState::eRoundCap, IGlState::eRoundedJoin, CGlModel2D::FindGeomNode(), CRef< C, Locker >::GetObject(), CRef< C, Locker >::GetPointerOrNull(), CGlRenderNode::GetState(), CGlVboNode::GetVBOGeom(), CGlResMgr::Instance(), CGlState::LineCapStyle(), CGlState::LineJoinStyle(), CGlState::LineWidth(), m_BoundaryNode, m_ColorTable, m_SL, m_Tree, m_TriFanNode, NULL, CGlState::PointSize(), CGlState::PolygonMode(), CRef< C, Locker >::Reset(), CTreeBoundaryNode::SetScheme(), CGlVboNode::SetVBOGeom(), CGlRenderNode::SetVisible(), CGlState::ShadeModel(), CGlRenderNode::SkipTarget(), and t.

Referenced by CPhyloTree::Clear(), and CPhyloTree::GetGraphicsModel().

◆ Render()

void CTreeGraphicsModel::Render ( CGlPane & pane )

virtual

◆ RenderPDF()

void CTreeGraphicsModel::RenderPDF	(	CGlPane &	pane,
		CRef< CPdf > &	pdf
	)

virtual

Draw to PDF file.

Reimplemented from CGlModel2D.

Definition at line 1170 of file tree_graphics_model.cpp.

References CGlRect< T >::Bottom(), CGlPane::Close(), GetGl(), CTreeTriFanNode::GetLabelVisibility(), IRender::GetModelViewMatrix(), CGlObject::GetName(), CRef< C, Locker >::GetPointer(), IRender::GetProjectionMatrix(), CGlPane::GetScale(), CGlPane::GetScaleX(), CGlPane::GetScaleY(), CGlRenderNode::GetState(), CGlPane::GetViewport(), CGlRect< T >::Height(), i, CGlRenderNode::IsVisible(), CGlRect< T >::Left(), m_BoundaryNode, m_ColorTable, CGlModel2D::m_ModelviewMatrix, CGlModel2D::m_ProjectionMatrix, CGlModel2D::m_TempGeomNodes, m_TriFanNode, CGlModel2D::m_Viewport, NULL, CGlPane::OpenOrtho(), CPdf::PrintModel(), CTreeBoundaryNode::RenderPdf(), CGlState::ScaleInvarient(), CTreeBoundaryNode::SetIncludeLabels(), CTreeBoundaryNode::SetPane(), CGlRect< T >::Width(), x_RenderNodeLabelsPdf(), and x_RenderNodesPdf().

◆ SetRenderTooltips()

void CTreeGraphicsModel::SetRenderTooltips ( bool b )

inline

Definition at line 179 of file tree_graphics_model.hpp.

References b, and m_RenderPdfTooltips.

Referenced by CPhyloTreePane::RenderPdf().

◆ SetRotateLabels()

void CTreeGraphicsModel::SetRotateLabels ( bool b )

inline

Definition at line 176 of file tree_graphics_model.hpp.

References b, and m_RotateLabels.

Referenced by IPhyloTreeRender::BufferedRender(), and IPhyloTreeRender::x_SetElementVisibility().

◆ SetScheme()

void CTreeGraphicsModel::SetScheme ( CPhyloTreeScheme & sl )

Set rendering scheme for tree (some nodes need this to render)

Definition at line 542 of file tree_graphics_model.cpp.

References m_BoundaryNode, m_CollisionData, m_SL, NULL, CRef< C, Locker >::Reset(), CTreeCollisionModel2D::SetScheme(), and CTreeBoundaryNode::SetScheme().

Referenced by CPhyloTreeWidget::SetScheme().

◆ SyncBuffers()

void CTreeGraphicsModel::SyncBuffers ( )

virtual

Update buffers as needed.

Reimplemented from CGlModel2D.

Definition at line 427 of file tree_graphics_model.cpp.

References _ASSERT, CPhyloNodeData::eHideChildren, CGlModel2D::FindGeomNode(), CGlRenderNode::GetState(), CRgbaGradColorTable::GetTexture(), CGlVboNode::GetVertexCount(), i, CGlRenderNode::IsVisible(), m_ColorTable, m_NodeIndices, n, NULL, CGlRenderNode::SetDefaultPosition(), CGlState::SetTexture(), CGlVboNode::SetVertexBuffer2D(), and CGlRenderNode::SetVisible().

Referenced by IPhyloTreeRender::BufferedRender().

◆ x_CircularLabelMinAngle()

float CTreeGraphicsModel::x_CircularLabelMinAngle	(	const CGlPane &	pane,
		const CVect3< float > &	scale,
		const CPhyloTreeNode &	n,
		bool &	visible
	)		const

protected

Definition at line 596 of file tree_graphics_model.cpp.

References IGlFont::eMetric_CharHeight, IGlFont::eMetric_Descender, CPhyloTreeScheme::GetFont(), CPhyloTreeScheme::GetMaxNodeSize(), CGlTextureFont::GetMetric(), m_CladogramCenter, m_DeltaTheta, m_SL, max(), n, CVect2< T >::Normalize(), CGlPane::Project(), r(), th, CVect2< T >::X(), CVect3< T >::X(), CGlPoint< T >::X(), CVect2< T >::Y(), CVect3< T >::Y(), and CGlPoint< T >::Y().

Referenced by GetCurrentRotationAngle(), and x_CircularLabelMinRotate().

◆ x_CircularLabelMinRotate()

void CTreeGraphicsModel::x_CircularLabelMinRotate	(	const CGlPane &	pane,
		const CVect3< float > &	scale,
		CPhyloTreeNode &	n,
		bool	truncate_labels
	)

protected

Definition at line 718 of file tree_graphics_model.cpp.

References a, CPhyloTreeScheme::GetFont(), CRef< C, Locker >::GetPointer(), m_ColorTable, m_SL, n, and x_CircularLabelMinAngle().

Referenced by x_RenderNodes().

◆ x_CircularLabelTrim()

void CTreeGraphicsModel::x_CircularLabelTrim	(	const CGlPane &	pane,
		const CVect3< float > &	scale,
		CPhyloTreeNode &	n,
		bool	truncate_labels
	)

protected

Definition at line 551 of file tree_graphics_model.cpp.

References abs, CPhyloTreeScheme::GetFont(), CRef< C, Locker >::GetPointer(), CVect2< T >::Length(), m_CladogramCenter, m_ColorTable, m_DeltaTheta, m_SL, n, CGlPane::Project(), r(), CVect2< T >::X(), CGlPoint< T >::X(), CVect2< T >::Y(), and CGlPoint< T >::Y().

Referenced by x_RenderNodes().

◆ x_Project()

CVect2< float > CTreeGraphicsModel::x_Project ( CVect2< float > & p )

protected

Definition at line 1075 of file tree_graphics_model.cpp.

References gluProjectX(), CGlModel2D::m_ModelviewMatrix, CGlModel2D::m_ProjectionMatrix, CGlModel2D::m_Viewport, CVect2< T >::X(), and CVect2< T >::Y().

◆ x_RenderBoundariesPdf()

void CTreeGraphicsModel::x_RenderBoundariesPdf	(	CGlPane &	pane,
		CRef< CPdf > &	pdf,
		const CVect3< float > &	scale
	)

protected

◆ x_RenderNodeLabelsPdf()

void CTreeGraphicsModel::x_RenderNodeLabelsPdf	(	CGlPane &	pane,
		CRef< CPdf > &	pdf,
		CVect3< float >	scale
	)

protected

Definition at line 922 of file tree_graphics_model.cpp.

References a, CPdf::AddTooltip(), IRender::Begin(), CPdf::BeginContent(), bound(), IRender::Color4fv(), CPhyloTreeScheme::eLabelsTruncated, IGlFont::eMetric_CharHeight, IRender::Enable(), IRender::End(), CPdf::EndContent(), CPdf::ePdfText, CRgbaGradColorTable::GetColor(), CRgbaColor::GetColorArray(), CPhyloTreeScheme::GetFont(), CGlTextureFont::GetFontFace(), CPdf::GetFontHandler(), CGlTextureFont::GetFontSize(), GetGl(), CPhyloTreeScheme::GetLabelTruncation(), CTreeTriFanNode::GetLabelVisibility(), IRender::GetMetric(), CRef< C, Locker >::GetObject(), CVectorPrinter::GetOptions(), GetRotateLabels(), CGlPane::GetScaleX(), CGlPane::GetScaleY(), CPrintOptions::GetUserUnit(), gluProjectX(), i, label, IRender::LoadIdentity(), m_ColorTable, CGlModel2D::m_ModelviewMatrix, m_NodeIndices, CGlModel2D::m_ProjectionMatrix, m_RenderPdfTooltips, m_RotateLabels, m_SL, m_Tree, m_TriFanNode, CGlModel2D::m_Viewport, n, IRender::PolygonMode(), CPdf::PrintText(), r(), IRender::RectC(), CPhyloTreeScheme::SetTooltipFormat(), string, IRender::TextWidth(), IRender::Vertex2f(), CVect2< T >::X(), CVect3< T >::X(), CVect2< T >::Y(), CVect3< T >::Y(), and CVect4< T >::Y().

Referenced by RenderPDF().

◆ x_RenderNodes()

void CTreeGraphicsModel::x_RenderNodes	(	CGlPane &	pane,
		const CVect3< float > &	scale
	)

protected

Definition at line 758 of file tree_graphics_model.cpp.

References CGlState::ColorC(), CPhyloNodeData::eHideChildren, CPhyloTreeScheme::eLabelsTruncated, CSpatialHash2D< T >::Get(), CPhyloTreeScheme::GetFont(), CPhyloTreeScheme::GetLabelTruncation(), CTreeTriFanNode::GetLabelVisibility(), CSpatialHash2D< T >::GetMaxVisIndex(), CSpatialHash2D< T >::GetMinVisIndex(), CRef< C, Locker >::GetPointer(), CGlRenderNode::GetState(), i, CMatrix4< T >::Identity(), CSpatialHash2D< T >::InBounds(), CGlRenderNode::IsVisible(), m_CollisionData, m_ColorTable, m_EnableCircularLabelTrimming, CollisionEntry::m_Labels, m_NodeRenderCount, m_RotateLabels, m_SL, m_TriFanNode, n, CGlRenderNode::Render(), CGlRenderNode::SetPosition(), CVect2< T >::X(), x_CircularLabelMinRotate(), x_CircularLabelTrim(), and CVect2< T >::Y().

Referenced by Render().

◆ x_RenderNodesPdf()

void CTreeGraphicsModel::x_RenderNodesPdf	(	CGlPane &	pane,
		CRef< CPdf > &	pdf,
		CVect3< float >	scale
	)

protected

Member Data Documentation

◆ m_BoundaryNode

CTreeBoundaryNode* CTreeGraphicsModel::m_BoundaryNode

protected

Definition at line 218 of file tree_graphics_model.hpp.

Referenced by ClearArrays(), GetBoundaryNode(), Init(), Render(), RenderPDF(), SetScheme(), and ~CTreeGraphicsModel().

◆ m_BoundaryRenderTime

float CTreeGraphicsModel::m_BoundaryRenderTime

Definition at line 244 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), and Render().

◆ m_CDUpdateTime

float CTreeGraphicsModel::m_CDUpdateTime

Definition at line 247 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), and IPhyloTreeRender::x_SetElementVisibility().

◆ m_CladogramCenter

CVect2<float> CTreeGraphicsModel::m_CladogramCenter

protected

Definition at line 237 of file tree_graphics_model.hpp.

Referenced by EnableCircularLabelTrimming(), x_CircularLabelMinAngle(), and x_CircularLabelTrim().

◆ m_CollapseTexture

CIRef<I3DTexture> CTreeGraphicsModel::m_CollapseTexture

protected

Definition at line 230 of file tree_graphics_model.hpp.

Referenced by AddTempCollapsedNode().

◆ m_CollisionData

CTreeCollisionModel2D CTreeGraphicsModel::m_CollisionData

protected

Definition at line 214 of file tree_graphics_model.hpp.

Referenced by GetCollisionData(), SetScheme(), and x_RenderNodes().

◆ m_ColorTable

CRef<CRgbaGradColorTable> CTreeGraphicsModel::m_ColorTable

protected

Definition at line 223 of file tree_graphics_model.hpp.

Referenced by GetColorTable(), Init(), RenderPDF(), SyncBuffers(), x_CircularLabelMinRotate(), x_CircularLabelTrim(), x_RenderNodeLabelsPdf(), x_RenderNodes(), and x_RenderNodesPdf().

◆ m_DeltaTheta

float CTreeGraphicsModel::m_DeltaTheta

protected

Definition at line 238 of file tree_graphics_model.hpp.

Referenced by EnableCircularLabelTrimming(), x_CircularLabelMinAngle(), and x_CircularLabelTrim().

◆ m_EnableCircularLabelTrimming

bool CTreeGraphicsModel::m_EnableCircularLabelTrimming

protected

These are specialized for rendering circular cladograms.

It gives info to approximate positions of adjacent labels so that labels can be trimmed and rotation can be done in a minimal fashion This is automatically disabled when ClearArrays is called.

Definition at line 236 of file tree_graphics_model.hpp.

Referenced by ClearArrays(), EnableCircularLabelTrimming(), GetCurrentRotationAngle(), and x_RenderNodes().

◆ m_LineRenderTime

float CTreeGraphicsModel::m_LineRenderTime

Definition at line 242 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), and Render().

◆ m_NodeIndices

vector<size_t> CTreeGraphicsModel::m_NodeIndices

protected

Definition at line 216 of file tree_graphics_model.hpp.

Referenced by ClearArrays(), GetNodeIndices(), SyncBuffers(), x_RenderNodeLabelsPdf(), and x_RenderNodesPdf().

◆ m_NodeRenderCount

int CTreeGraphicsModel::m_NodeRenderCount

Definition at line 245 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), and x_RenderNodes().

◆ m_NodesRenderTime

float CTreeGraphicsModel::m_NodesRenderTime

Definition at line 243 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), and Render().

◆ m_RenderPdfTooltips

bool CTreeGraphicsModel::m_RenderPdfTooltips

protected

Definition at line 227 of file tree_graphics_model.hpp.

Referenced by GetRenderTooltips(), SetRenderTooltips(), and x_RenderNodeLabelsPdf().

◆ m_RenderTime

float CTreeGraphicsModel::m_RenderTime

Definition at line 241 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), Render(), and IPhyloTreeRender::Render().

◆ m_RotateLabels

bool CTreeGraphicsModel::m_RotateLabels

protected

Definition at line 225 of file tree_graphics_model.hpp.

Referenced by GetCurrentRotationAngle(), GetRotateLabels(), SetRotateLabels(), x_RenderNodeLabelsPdf(), and x_RenderNodes().

◆ m_SL

CRef<CPhyloTreeScheme> CTreeGraphicsModel::m_SL

protected

Definition at line 222 of file tree_graphics_model.hpp.

Referenced by Init(), SetScheme(), x_CircularLabelMinAngle(), x_CircularLabelMinRotate(), x_CircularLabelTrim(), x_RenderNodeLabelsPdf(), and x_RenderNodes().

◆ m_TotalTime

float CTreeGraphicsModel::m_TotalTime

Definition at line 246 of file tree_graphics_model.hpp.

Referenced by CTreeGraphicsModel(), and CPhyloTreePane::x_Render().

◆ m_Tree

CPhyloTree* CTreeGraphicsModel::m_Tree

protected

Definition at line 221 of file tree_graphics_model.hpp.

Referenced by EnableCircularLabelTrimming(), GetTree(), Init(), and x_RenderNodeLabelsPdf().

◆ m_TriFanNode

CTreeTriFanNode* CTreeGraphicsModel::m_TriFanNode

protected

Definition at line 219 of file tree_graphics_model.hpp.

Referenced by ClearArrays(), GetTriFanNode(), Init(), Render(), RenderPDF(), x_RenderNodeLabelsPdf(), x_RenderNodes(), x_RenderNodesPdf(), and ~CTreeGraphicsModel().

The documentation for this class was generated from the following files:

include/gui/widgets/phylo_tree/tree_graphics_model.hpp
src/gui/widgets/phylo_tree/tree_graphics_model.cpp

Public Member Functions

Public Attributes

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CTreeGraphicsModel()

◆ ~CTreeGraphicsModel()

Member Function Documentation

◆ AddTempCollapsedNode()

◆ ClearArrays()

◆ EnableCircularLabelTrimming()

◆ GetBoundaryNode()

◆ GetCollisionData() [1/2]

◆ GetCollisionData() [2/2]

◆ GetColorTable()

◆ GetCurrentRotationAngle()

◆ GetNodeIndices()

◆ GetRenderTooltips()

◆ GetRotateLabels()

◆ GetTree()

◆ GetTriFanNode()

◆ Init()

◆ Render()

◆ RenderPDF()

◆ SetRenderTooltips()

◆ SetRotateLabels()

◆ SetScheme()

◆ SyncBuffers()

◆ x_CircularLabelMinAngle()

◆ x_CircularLabelMinRotate()

◆ x_CircularLabelTrim()

◆ x_Project()

◆ x_RenderBoundariesPdf()

◆ x_RenderNodeLabelsPdf()

◆ x_RenderNodes()

◆ x_RenderNodesPdf()

Member Data Documentation

◆ m_BoundaryNode

◆ m_BoundaryRenderTime

◆ m_CDUpdateTime

◆ m_CladogramCenter

◆ m_CollapseTexture

◆ m_CollisionData

◆ m_ColorTable

◆ m_DeltaTheta

◆ m_EnableCircularLabelTrimming

◆ m_LineRenderTime

◆ m_NodeIndices

◆ m_NodeRenderCount

◆ m_NodesRenderTime

◆ m_RenderPdfTooltips

◆ m_RenderTime

◆ m_RotateLabels

◆ m_SL

◆ m_TotalTime

◆ m_Tree

◆ m_TriFanNode