NCBI C++ ToolKit
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This is the complete list of members for CTrypChymo, including all inherited members.
AddReference(void) const | CObject | inline |
CalcAndCut(const char *SeqStart, const char *SeqEnd, const char **PepStart, int *Masses, int &NumMod, int MaxNumMod, int *EndMasses, CMSMod &VariableMods, CMSMod &FixedMods, CMod ModList[], const int *IntCalcMass, const int *PrecursorIntCalcMass, CRef< CMSModSpecSet > &Modset, int Maxproductions) | CCleave | |
CalcMass(char SeqChar, int *Masses, const int *IntCalcMass) | CCleave | inline |
CanBeDeleted(void) const THROWS_NONE | CObject | inline |
CCleave(void) | CCleave | |
CDebugDumpable(void) | CDebugDumpable | inline |
CheckAAMods(EMSModType ModType, CMSMod &VariableMods, int &NumMod, char SeqChar, int MaxNumMod, CMod ModList[], const char *iPepStart, bool setfixed, CRef< CMSModSpecSet > &Modset) | CCleave | inline |
CheckCleave(const char *iPepStart, const char *iSeqStart) | CCleave | inline |
CheckCleaveChar(const char *iPepStart) const | CCleave | inline |
CheckMods(EMSModType NonSpecificIn, EMSModType Specific, CMSMod &VariableMods, CMSMod &FixedMods, int &NumMod, char SeqChar, int MaxNumMod, CMod ModList[], const char *iPepStart, CRef< CMSModSpecSet > &Modset) | CCleave | inline |
CheckNonSpecificMods(EMSModType ModType, CMSMod &VariableMods, int &NumMod, int MaxNumMod, CMod ModList[], const char *iPepStart, bool setfixed, CRef< CMSModSpecSet > &Modset) | CCleave | inline |
CheckProline | CCleave | protected |
CheckReferenceOverflow(TCount count) const | CObject | private |
CleaveAt | CCleave | protected |
CleaveOffset | CCleave | protected |
CObject(void) | CObject | |
CObject(const CObject &src) | CObject | |
CTrypChymo(void) | CTrypChymo | |
DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CObject | virtual |
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DeleteThis(void) | CObject | protectedvirtual |
DoDeleteThisObject(void) | CObject | virtual |
DoNotDeleteThisObject(void) | CObject | virtual |
DumpToConsole(void) const | CDebugDumpable | |
EAllocFillMode enum name | CObject | |
eAllocFillNone enum value | CObject | |
eAllocFillPattern enum value | CObject | |
eAllocFillZero enum value | CObject | |
eCounterBitsCanBeDeleted | CObject | static |
eCounterBitsInPlainHeap | CObject | static |
eCounterBitsPlaceMask | CObject | static |
eCounterStateMask | CObject | static |
eCounterStep | CObject | static |
eCounterValid | CObject | static |
EnableDebugDump(bool on) | CDebugDumpable | static |
EndMass(int *Masses) | CCleave | inline |
findfirst(char *Seq, int Pos, int SeqLen) | CCleave | |
GetAllocFillMode(void) | CObject | static |
GetCheckProline(void) const | CCleave | inline |
GetCleaveAt(void) const | CCleave | inline |
GetCleaveNum(void) const | CCleave | inline |
GetCleaveOffset(void) const | CCleave | inline |
GetCleaveSense(void) const | CCleave | inline |
GetNMethionine(void) const | CCleave | inline |
GetNonSpecific(void) const | CCleave | inline |
GetStop(void) const | CCleave | inline |
GetTopDown(void) const | CCleave | inline |
InitCounter(void) | CObject | inlineprivate |
InvalidObject(void) const | CObject | private |
IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
kCleave | CCleave | protected |
m_Counter | CObject | mutableprivate |
NMethionine | CCleave | protected |
NonSpecific | CCleave | protected |
ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
operator delete(void *ptr) | CObject | |
operator delete(void *ptr, void *place) | CObject | |
operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
operator delete[](void *ptr) | CObject | |
operator new(size_t size) | CObject | |
operator new(size_t size, void *place) | CObject | |
operator new(size_t size, CObjectMemoryPool *place) | CObject | |
operator new[](size_t size) | CObject | |
operator=(const CObject &src) THROWS_NONE | CObject | inline |
ProtonMass | CCleave | protected |
Referenced(void) const THROWS_NONE | CObject | inline |
ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
ReleaseReference(void) const | CObject | |
RemoveLastReference(TCount count) const | CObject | private |
RemoveReference(void) const | CObject | inline |
ReverseAA | CCleave | protected |
SetAllocFillMode(EAllocFillMode mode) | CObject | static |
SetAllocFillMode(const string &value) | CObject | static |
SetNMethionine(void) | CCleave | inline |
SetStop(void) | CCleave | inline |
sm_DumpEnabled | CDebugDumpable | privatestatic |
Stop | CCleave | protected |
TCount typedef | CObject | |
TCounter typedef | CObject | |
TermMass | CCleave | protected |
ThrowNullPointerException(void) | CObject | static |
ThrowNullPointerException(const type_info &type) | CObject | static |
TLockerType typedef | CObject | |
TopDown | CCleave | protected |
~CDebugDumpable(void) | CDebugDumpable | virtual |
~CObject(void) | CObject | virtual |