NCBI C++ ToolKit
CTrypChymo Member List

This is the complete list of members for CTrypChymo, including all inherited members.

AddReference(void) constCObjectinline
CalcAndCut(const char *SeqStart, const char *SeqEnd, const char **PepStart, int *Masses, int &NumMod, int MaxNumMod, int *EndMasses, CMSMod &VariableMods, CMSMod &FixedMods, CMod ModList[], const int *IntCalcMass, const int *PrecursorIntCalcMass, CRef< CMSModSpecSet > &Modset, int Maxproductions)CCleave
CalcMass(char SeqChar, int *Masses, const int *IntCalcMass)CCleaveinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CCleave(void)CCleave
CDebugDumpable(void)CDebugDumpableinline
CheckAAMods(EMSModType ModType, CMSMod &VariableMods, int &NumMod, char SeqChar, int MaxNumMod, CMod ModList[], const char *iPepStart, bool setfixed, CRef< CMSModSpecSet > &Modset)CCleaveinline
CheckCleave(const char *iPepStart, const char *iSeqStart)CCleaveinline
CheckCleaveChar(const char *iPepStart) constCCleaveinline
CheckMods(EMSModType NonSpecificIn, EMSModType Specific, CMSMod &VariableMods, CMSMod &FixedMods, int &NumMod, char SeqChar, int MaxNumMod, CMod ModList[], const char *iPepStart, CRef< CMSModSpecSet > &Modset)CCleaveinline
CheckNonSpecificMods(EMSModType ModType, CMSMod &VariableMods, int &NumMod, int MaxNumMod, CMod ModList[], const char *iPepStart, bool setfixed, CRef< CMSModSpecSet > &Modset)CCleaveinline
CheckProlineCCleaveprotected
CheckReferenceOverflow(TCount count) constCObjectprivate
CleaveAtCCleaveprotected
CleaveOffsetCCleaveprotected
CObject(void)CObject
CObject(const CObject &src)CObject
CTrypChymo(void)CTrypChymo
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
EndMass(int *Masses)CCleaveinline
findfirst(char *Seq, int Pos, int SeqLen)CCleave
GetAllocFillMode(void)CObjectstatic
GetCheckProline(void) constCCleaveinline
GetCleaveAt(void) constCCleaveinline
GetCleaveNum(void) constCCleaveinline
GetCleaveOffset(void) constCCleaveinline
GetCleaveSense(void) constCCleaveinline
GetNMethionine(void) constCCleaveinline
GetNonSpecific(void) constCCleaveinline
GetStop(void) constCCleaveinline
GetTopDown(void) constCCleaveinline
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
kCleaveCCleaveprotected
m_CounterCObjectmutableprivate
NMethionineCCleaveprotected
NonSpecificCCleaveprotected
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CObject &src) THROWS_NONECObjectinline
ProtonMassCCleaveprotected
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
ReverseAACCleaveprotected
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetNMethionine(void)CCleaveinline
SetStop(void)CCleaveinline
sm_DumpEnabledCDebugDumpableprivatestatic
StopCCleaveprotected
TCount typedefCObject
TCounter typedefCObject
TermMassCCleaveprotected
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TLockerType typedefCObject
TopDownCCleaveprotected
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
Modified on Wed Apr 17 13:08:30 2024 by modify_doxy.py rev. 669887