CTx_evidence_Base Class Reference

Represents ASN.1 type Tx-evidence defined in file seqfeat.asn

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CTx_evidence_Base –. More...

#include <objects/seqfeat/Tx_evidence_.hpp>

Inheritance diagram for CTx_evidence_Base:

Collaboration diagram for CTx_evidence_Base:

Public Types
enum	EExp_code {   eExp_code_unknown = 0 , eExp_code_rna_seq = 1 , eExp_code_rna_size = 2 , eExp_code_np_map = 3 ,   eExp_code_np_size = 4 , eExp_code_pe_seq = 5 , eExp_code_cDNA_seq = 6 , eExp_code_pe_map = 7 ,   eExp_code_pe_size = 8 , eExp_code_pseudo_seq = 9 , eExp_code_rev_pe_map = 10 , eExp_code_other = 255 }
enum	EExpression_system {   eExpression_system_unknown = 0 , eExpression_system_physiological = 1 , eExpression_system_in_vitro = 2 , eExpression_system_oocyte = 3 ,   eExpression_system_transfection = 4 , eExpression_system_transgenic = 5 , eExpression_system_other = 255 }
enum class	E_memberIndex {   e__allMandatory = 0 , e_exp_code , e_expression_system , e_low_prec_data ,   e_from_homolog }
typedef EExp_code	TExp_code
typedef EExpression_system	TExpression_system
typedef bool	TLow_prec_data
typedef bool	TFrom_homolog
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	TmemberIndex
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CTx_evidence_Base (void)
virtual	~CTx_evidence_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetExp_code (void) const
	Check if a value has been assigned to Exp_code data member. More...
bool	CanGetExp_code (void) const
	Check if it is safe to call GetExp_code method. More...
void	ResetExp_code (void)
	Reset Exp_code data member. More...
TExp_code	GetExp_code (void) const
	Get the Exp_code member data. More...
void	SetExp_code (TExp_code value)
	Assign a value to Exp_code data member. More...
TExp_code &	SetExp_code (void)
	Assign a value to Exp_code data member. More...
bool	IsSetExpression_system (void) const
	Check if a value has been assigned to Expression_system data member. More...
bool	CanGetExpression_system (void) const
	Check if it is safe to call GetExpression_system method. More...
void	ResetExpression_system (void)
	Reset Expression_system data member. More...
void	SetDefaultExpression_system (void)
	Assign default value to Expression_system data member. More...
TExpression_system	GetExpression_system (void) const
	Get the Expression_system member data. More...
void	SetExpression_system (TExpression_system value)
	Assign a value to Expression_system data member. More...
TExpression_system &	SetExpression_system (void)
	Assign a value to Expression_system data member. More...
bool	IsSetLow_prec_data (void) const
	Check if a value has been assigned to Low_prec_data data member. More...
bool	CanGetLow_prec_data (void) const
	Check if it is safe to call GetLow_prec_data method. More...
void	ResetLow_prec_data (void)
	Reset Low_prec_data data member. More...
void	SetDefaultLow_prec_data (void)
	Assign default value to Low_prec_data data member. More...
TLow_prec_data	GetLow_prec_data (void) const
	Get the Low_prec_data member data. More...
void	SetLow_prec_data (TLow_prec_data value)
	Assign a value to Low_prec_data data member. More...
TLow_prec_data &	SetLow_prec_data (void)
	Assign a value to Low_prec_data data member. More...
bool	IsSetFrom_homolog (void) const
	experiment actually done on Check if a value has been assigned to From_homolog data member. More...
bool	CanGetFrom_homolog (void) const
	Check if it is safe to call GetFrom_homolog method. More...
void	ResetFrom_homolog (void)
	Reset From_homolog data member. More...
void	SetDefaultFrom_homolog (void)
	Assign default value to From_homolog data member. More...
TFrom_homolog	GetFrom_homolog (void) const
	Get the From_homolog member data. More...
void	SetFrom_homolog (TFrom_homolog value)
	Assign a value to From_homolog data member. More...
TFrom_homolog &	SetFrom_homolog (void)
	Assign a value to From_homolog data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Static Public Member Functions
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EExp_code (void)
	Access to EExp_code's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EExpression_system (void)
	Access to EExpression_system's attributes (values, names) as defined in spec. More...
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CSerialObject	Tparent

Private Member Functions
	CTx_evidence_Base (const CTx_evidence_Base &)
CTx_evidence_Base &	operator= (const CTx_evidence_Base &)

Private Attributes
Uint4	m_set_State [1]
EExp_code	m_Exp_code
EExpression_system	m_Expression_system
bool	m_Low_prec_data
bool	m_From_homolog

Additional Inherited Members
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CTx_evidence_Base –.

Definition at line 68 of file Tx_evidence_.hpp.

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The documentation for this class was generated from the following files:

• include/objects/seqfeat/Tx_evidence_.hpp
• src/objects/seqfeat/Tx_evidence_.cpp