Search Toolkit Book for CTxinit
#include <objects/seqfeat/Txinit.hpp>
Inheritance diagram for CTxinit:
Collaboration diagram for CTxinit:
Public Member Functions | |
| CTxinit (void) | |
| ~CTxinit (void) | |
| Public Member Functions inherited from CTxinit_Base | |
| CTxinit_Base (void) | |
| virtual | ~CTxinit_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetName (void) const |
| descriptive name of initiation site Check if a value has been assigned to Name data member. More... | |
| bool | CanGetName (void) const |
| Check if it is safe to call GetName method. More... | |
| void | ResetName (void) |
| Reset Name data member. More... | |
| const TName & | GetName (void) const |
| Get the Name member data. More... | |
| void | SetName (const TName &value) |
| Assign a value to Name data member. More... | |
| void | SetName (TName &&value) |
| TName & | SetName (void) |
| Assign a value to Name data member. More... | |
| bool | IsSetSyn (void) const |
| synonyms Check if a value has been assigned to Syn data member. More... | |
| bool | CanGetSyn (void) const |
| Check if it is safe to call GetSyn method. More... | |
| void | ResetSyn (void) |
| Reset Syn data member. More... | |
| const TSyn & | GetSyn (void) const |
| Get the Syn member data. More... | |
| TSyn & | SetSyn (void) |
| Assign a value to Syn data member. More... | |
| bool | IsSetGene (void) const |
| gene(s) transcribed Check if a value has been assigned to Gene data member. More... | |
| bool | CanGetGene (void) const |
| Check if it is safe to call GetGene method. More... | |
| void | ResetGene (void) |
| Reset Gene data member. More... | |
| const TGene & | GetGene (void) const |
| Get the Gene member data. More... | |
| TGene & | SetGene (void) |
| Assign a value to Gene data member. More... | |
| bool | IsSetProtein (void) const |
| protein(s) produced Check if a value has been assigned to Protein data member. More... | |
| bool | CanGetProtein (void) const |
| Check if it is safe to call GetProtein method. More... | |
| void | ResetProtein (void) |
| Reset Protein data member. More... | |
| const TProtein & | GetProtein (void) const |
| Get the Protein member data. More... | |
| TProtein & | SetProtein (void) |
| Assign a value to Protein data member. More... | |
| bool | IsSetRna (void) const |
| rna(s) produced Check if a value has been assigned to Rna data member. More... | |
| bool | CanGetRna (void) const |
| Check if it is safe to call GetRna method. More... | |
| void | ResetRna (void) |
| Reset Rna data member. More... | |
| const TRna & | GetRna (void) const |
| Get the Rna member data. More... | |
| TRna & | SetRna (void) |
| Assign a value to Rna data member. More... | |
| bool | IsSetExpression (void) const |
| tissue/time of expression Check if a value has been assigned to Expression data member. More... | |
| bool | CanGetExpression (void) const |
| Check if it is safe to call GetExpression method. More... | |
| void | ResetExpression (void) |
| Reset Expression data member. More... | |
| const TExpression & | GetExpression (void) const |
| Get the Expression member data. More... | |
| void | SetExpression (const TExpression &value) |
| Assign a value to Expression data member. More... | |
| void | SetExpression (TExpression &&value) |
| TExpression & | SetExpression (void) |
| Assign a value to Expression data member. More... | |
| bool | IsSetTxsystem (void) const |
| Check if a value has been assigned to Txsystem data member. More... | |
| bool | CanGetTxsystem (void) const |
| Check if it is safe to call GetTxsystem method. More... | |
| void | ResetTxsystem (void) |
| Reset Txsystem data member. More... | |
| TTxsystem | GetTxsystem (void) const |
| Get the Txsystem member data. More... | |
| void | SetTxsystem (TTxsystem value) |
| Assign a value to Txsystem data member. More... | |
| TTxsystem & | SetTxsystem (void) |
| Assign a value to Txsystem data member. More... | |
| bool | IsSetTxdescr (void) const |
| modifiers on txsystem Check if a value has been assigned to Txdescr data member. More... | |
| bool | CanGetTxdescr (void) const |
| Check if it is safe to call GetTxdescr method. More... | |
| void | ResetTxdescr (void) |
| Reset Txdescr data member. More... | |
| const TTxdescr & | GetTxdescr (void) const |
| Get the Txdescr member data. More... | |
| void | SetTxdescr (const TTxdescr &value) |
| Assign a value to Txdescr data member. More... | |
| void | SetTxdescr (TTxdescr &&value) |
| TTxdescr & | SetTxdescr (void) |
| Assign a value to Txdescr data member. More... | |
| bool | IsSetTxorg (void) const |
| organism supplying transcription apparatus Check if a value has been assigned to Txorg data member. More... | |
| bool | CanGetTxorg (void) const |
| Check if it is safe to call GetTxorg method. More... | |
| void | ResetTxorg (void) |
| Reset Txorg data member. More... | |
| const TTxorg & | GetTxorg (void) const |
| Get the Txorg member data. More... | |
| void | SetTxorg (TTxorg &value) |
| Assign a value to Txorg data member. More... | |
| TTxorg & | SetTxorg (void) |
| Assign a value to Txorg data member. More... | |
| bool | IsSetMapping_precise (void) const |
| mapping precise or approx Check if a value has been assigned to Mapping_precise data member. More... | |
| bool | CanGetMapping_precise (void) const |
| Check if it is safe to call GetMapping_precise method. More... | |
| void | ResetMapping_precise (void) |
| Reset Mapping_precise data member. More... | |
| void | SetDefaultMapping_precise (void) |
| Assign default value to Mapping_precise data member. More... | |
| TMapping_precise | GetMapping_precise (void) const |
| Get the Mapping_precise member data. More... | |
| void | SetMapping_precise (TMapping_precise value) |
| Assign a value to Mapping_precise data member. More... | |
| TMapping_precise & | SetMapping_precise (void) |
| Assign a value to Mapping_precise data member. More... | |
| bool | IsSetLocation_accurate (void) const |
| does Seq-loc reflect mapping Check if a value has been assigned to Location_accurate data member. More... | |
| bool | CanGetLocation_accurate (void) const |
| Check if it is safe to call GetLocation_accurate method. More... | |
| void | ResetLocation_accurate (void) |
| Reset Location_accurate data member. More... | |
| void | SetDefaultLocation_accurate (void) |
| Assign default value to Location_accurate data member. More... | |
| TLocation_accurate | GetLocation_accurate (void) const |
| Get the Location_accurate member data. More... | |
| void | SetLocation_accurate (TLocation_accurate value) |
| Assign a value to Location_accurate data member. More... | |
| TLocation_accurate & | SetLocation_accurate (void) |
| Assign a value to Location_accurate data member. More... | |
| bool | IsSetInittype (void) const |
| Check if a value has been assigned to Inittype data member. More... | |
| bool | CanGetInittype (void) const |
| Check if it is safe to call GetInittype method. More... | |
| void | ResetInittype (void) |
| Reset Inittype data member. More... | |
| TInittype | GetInittype (void) const |
| Get the Inittype member data. More... | |
| void | SetInittype (TInittype value) |
| Assign a value to Inittype data member. More... | |
| TInittype & | SetInittype (void) |
| Assign a value to Inittype data member. More... | |
| bool | IsSetEvidence (void) const |
| Check if a value has been assigned to Evidence data member. More... | |
| bool | CanGetEvidence (void) const |
| Check if it is safe to call GetEvidence method. More... | |
| void | ResetEvidence (void) |
| Reset Evidence data member. More... | |
| const TEvidence & | GetEvidence (void) const |
| Get the Evidence member data. More... | |
| TEvidence & | SetEvidence (void) |
| Assign a value to Evidence data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CTxinit_Base | Tparent |
Private Member Functions | |
| CTxinit (const CTxinit &value) | |
| CTxinit & | operator= (const CTxinit &value) |
Additional Inherited Members | |
| Public Types inherited from CTxinit_Base | |
| enum | ETxsystem { eTxsystem_unknown = 0 , eTxsystem_pol1 = 1 , eTxsystem_pol2 = 2 , eTxsystem_pol3 = 3 , eTxsystem_bacterial = 4 , eTxsystem_viral = 5 , eTxsystem_rna = 6 , eTxsystem_organelle = 7 , eTxsystem_other = 255 } |
| transcription apparatus used at this site More... | |
| enum | EInittype { eInittype_unknown = 0 , eInittype_single = 1 , eInittype_multiple = 2 , eInittype_region = 3 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_name , e_syn , e_gene , e_protein , e_rna , e_expression , e_txsystem , e_txdescr , e_txorg , e_mapping_precise , e_location_accurate , e_inittype , e_evidence } |
| typedef string | TName |
| typedef list< string > | TSyn |
| typedef list< CRef< CGene_ref > > | TGene |
| typedef list< CRef< CProt_ref > > | TProtein |
| typedef list< string > | TRna |
| typedef string | TExpression |
| typedef ETxsystem | TTxsystem |
| typedef string | TTxdescr |
| typedef COrg_ref | TTxorg |
| typedef bool | TMapping_precise |
| typedef bool | TLocation_accurate |
| typedef EInittype | TInittype |
| typedef list< CRef< CTx_evidence > > | TEvidence |
| typedef Tparent::CMemberIndex< E_memberIndex, 14 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CTxinit_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | ETxsystem (void) |
| Access to ETxsystem's attributes (values, names) as defined in spec. More... | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EInittype (void) |
| Access to EInittype's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CTxinit –.
Definition at line 65 of file Txinit.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqfeat/Txinit.hpp
- src/objects/seqfeat/Txinit.cpp
