AddReference(void) const | CObject | inline |
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive) | CSerialObject | virtual |
CanBeDeleted(void) const THROWS_NONE | CObject | inline |
CanGetAccession(void) const | CValidErrItem_Base | inline |
CanGetAccnver(void) const | CValidErrItem_Base | inline |
CanGetBioseq(void) const | CValidErrItem_Base | inline |
CanGetErrIndex(void) const | CValidErrItem_Base | inline |
CanGetErrorGroup(void) const | CValidErrItem_Base | inline |
CanGetErrorName(void) const | CValidErrItem_Base | inline |
CanGetFeatureId(void) const | CValidErrItem_Base | inline |
CanGetLocation(void) const | CValidErrItem_Base | inline |
CanGetLocus_tag(void) const | CValidErrItem_Base | inline |
CanGetMsg(void) const | CValidErrItem_Base | inline |
CanGetObj_content(void) const | CValidErrItem_Base | inline |
CanGetObjDesc(void) const | CValidErrItem_Base | inline |
CanGetObjectType(void) const | CValidErrItem_Base | inline |
CanGetProduct_loc(void) const | CValidErrItem_Base | inline |
CanGetSeqOffset(void) const | CValidErrItem_Base | inline |
CanGetSev(void) const | CValidErrItem_Base | inline |
CanGetVersion(void) const | CValidErrItem_Base | inline |
CDebugDumpable(void) | CDebugDumpable | inline |
CheckReferenceOverflow(TCount count) const | CObject | private |
CObject(void) | CObject | |
CObject(const CObject &src) | CObject | |
ConvertErrCode(unsigned int) | CValidErrItem | static |
ConvertErrGroup(unsigned int) | CValidErrItem | static |
ConvertSeverity(EDiagSev sev) | CValidErrItem | static |
ConvertToErrCode(const string &str) | CValidErrItem | static |
CSerialObject(void) | CSerialObject | |
CValidErrItem() | CValidErrItem | inline |
CValidErrItem(EDiagSev sev, unsigned int ec, const string &msg, const string &obj_desc, const CSerialObject *obj, const CSeq_entry *context, const string &acc, const int ver, const int seq_offset=0) | CValidErrItem | |
CValidErrItem(const CValidErrItem &value)=delete | CValidErrItem | private |
CValidErrItem_Base(void) | CValidErrItem_Base | |
CValidErrItem_Base(const CValidErrItem_Base &) | CValidErrItem_Base | private |
DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CSerialObject | virtual |
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DECLARE_INTERNAL_TYPE_INFO() | CValidErrItem_Base | |
DeleteThis(void) | CObject | protectedvirtual |
DoDeleteThisObject(void) | CObject | virtual |
DoNotDeleteThisObject(void) | CObject | virtual |
DumpToConsole(void) const | CDebugDumpable | |
E_memberIndex enum name | CValidErrItem_Base | |
EAllocFillMode enum name | CObject | |
eAllocFillNone enum value | CObject | |
eAllocFillPattern enum value | CObject | |
eAllocFillZero enum value | CObject | |
eCounterBitsCanBeDeleted | CObject | static |
eCounterBitsInPlainHeap | CObject | static |
eCounterBitsPlaceMask | CObject | static |
eCounterStateMask | CObject | static |
eCounterStep | CObject | static |
eCounterValid | CObject | static |
EnableDebugDump(bool on) | CDebugDumpable | static |
EObjectType enum name | CValidErrItem_Base | |
EObjectType(void) | CValidErrItem_Base | static |
eObjectType_annotdesc enum value | CValidErrItem_Base | |
eObjectType_bioseq enum value | CValidErrItem_Base | |
eObjectType_bioseqset enum value | CValidErrItem_Base | |
eObjectType_seqalign enum value | CValidErrItem_Base | |
eObjectType_seqannot enum value | CValidErrItem_Base | |
eObjectType_seqdesc enum value | CValidErrItem_Base | |
eObjectType_seqentry enum value | CValidErrItem_Base | |
eObjectType_seqfeat enum value | CValidErrItem_Base | |
eObjectType_seqgraph enum value | CValidErrItem_Base | |
eObjectType_seqsub enum value | CValidErrItem_Base | |
eObjectType_submitblock enum value | CValidErrItem_Base | |
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const | CSerialObject | virtual |
ESev enum name | CValidErrItem_Base | |
ESev(void) | CValidErrItem_Base | static |
eSev_critical enum value | CValidErrItem_Base | |
eSev_error enum value | CValidErrItem_Base | |
eSev_fatal enum value | CValidErrItem_Base | |
eSev_info enum value | CValidErrItem_Base | |
eSev_trace enum value | CValidErrItem_Base | |
eSev_warning enum value | CValidErrItem_Base | |
GetAccession(void) const | CValidErrItem_Base | inline |
GetAccnver(void) const | CValidErrItem_Base | inline |
GetAllocFillMode(void) | CObject | static |
GetBioseq(void) const | CValidErrItem_Base | inline |
GetContext() const | CValidErrItem | inline |
GetErrCode() const | CValidErrItem | |
GetErrCount() | CValidErrItem | static |
GetErrGroup() const | CValidErrItem | |
GetErrIndex(void) const | CValidErrItem_Base | inline |
GetErrorGroup(void) const | CValidErrItem_Base | inline |
GetErrorName(void) const | CValidErrItem_Base | inline |
GetFeatureId(void) const | CValidErrItem_Base | inline |
GetLocation(void) const | CValidErrItem_Base | inline |
GetLocus_tag(void) const | CValidErrItem_Base | inline |
GetMsg(void) const | CValidErrItem_Base | inline |
GetNamespaceName(void) const | CSerialObject | |
GetNamespacePrefix(void) const | CSerialObject | |
GetObj_content(void) const | CValidErrItem_Base | inline |
GetObjDesc(void) const | CValidErrItem_Base | inline |
GetObject() const | CValidErrItem | |
GetObjectType(void) const | CValidErrItem_Base | inline |
GetProduct_loc(void) const | CValidErrItem_Base | inline |
GetSeqOffset(void) const | CValidErrItem_Base | inline |
GetSev(void) const | CValidErrItem_Base | inline |
GetSeverity() const | CValidErrItem | inline |
GetThisTypeInfo(void) const =0 | CSerialObject | pure virtual |
GetVerbose() const | CValidErrItem | |
GetVersion(void) const | CValidErrItem_Base | inline |
HasNamespaceName(void) const | CSerialObject | |
HasNamespacePrefix(void) const | CSerialObject | |
InitCounter(void) | CObject | inlineprivate |
InvalidObject(void) const | CObject | private |
IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
IsSetAccession(void) const | CValidErrItem_Base | inline |
IsSetAccnver(void) const | CValidErrItem_Base | inline |
IsSetBioseq(void) const | CValidErrItem_Base | inline |
IsSetContext() const | CValidErrItem | inline |
IsSetErrIndex(void) const | CValidErrItem_Base | inline |
IsSetErrorGroup(void) const | CValidErrItem_Base | inline |
IsSetErrorName(void) const | CValidErrItem_Base | inline |
IsSetFeatureId(void) const | CValidErrItem_Base | inline |
IsSetLocation(void) const | CValidErrItem_Base | inline |
IsSetLocus_tag(void) const | CValidErrItem_Base | inline |
IsSetMsg(void) const | CValidErrItem_Base | inline |
IsSetObj_content(void) const | CValidErrItem_Base | inline |
IsSetObjDesc(void) const | CValidErrItem_Base | inline |
IsSetObject() const | CValidErrItem | |
IsSetObjectType(void) const | CValidErrItem_Base | inline |
IsSetProduct_loc(void) const | CValidErrItem_Base | inline |
IsSetSeqOffset(void) const | CValidErrItem_Base | inline |
IsSetSev(void) const | CValidErrItem_Base | inline |
IsSetVersion(void) const | CValidErrItem_Base | inline |
m_Accession | CValidErrItem_Base | private |
m_Accnver | CValidErrItem_Base | private |
m_Bioseq | CValidErrItem_Base | private |
m_Counter | CObject | mutableprivate |
m_Ctx | CValidErrItem | private |
m_ErrIndex | CValidErrItem_Base | private |
m_ErrorGroup | CValidErrItem_Base | private |
m_ErrorName | CValidErrItem_Base | private |
m_FeatureId | CValidErrItem_Base | private |
m_Location | CValidErrItem_Base | private |
m_Locus_tag | CValidErrItem_Base | private |
m_Msg | CValidErrItem_Base | private |
m_Obj_content | CValidErrItem_Base | private |
m_ObjDesc | CValidErrItem_Base | private |
m_Object | CValidErrItem | private |
m_ObjectType | CValidErrItem_Base | private |
m_Product_loc | CValidErrItem_Base | private |
m_SeqOffset | CValidErrItem_Base | private |
m_set_State | CValidErrItem_Base | private |
m_Sev | CValidErrItem_Base | private |
m_Version | CValidErrItem_Base | private |
ms_UnassignedByte | CSerialObject | static |
ms_UnassignedStr | CSerialObject | static |
ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
operator delete(void *ptr) | CObject | |
operator delete(void *ptr, void *place) | CObject | |
operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
operator delete[](void *ptr) | CObject | |
operator new(size_t size) | CObject | |
operator new(size_t size, void *place) | CObject | |
operator new(size_t size, CObjectMemoryPool *place) | CObject | |
operator new[](size_t size) | CObject | |
operator=(const CValidErrItem &value)=delete | CValidErrItem | private |
CSerialObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
Referenced(void) const THROWS_NONE | CObject | inline |
ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
ReleaseReference(void) const | CObject | |
RemoveLastReference(TCount count) const | CObject | private |
RemoveReference(void) const | CObject | inline |
Reset(void) | CValidErrItem_Base | virtual |
ResetAccession(void) | CValidErrItem_Base | |
ResetAccnver(void) | CValidErrItem_Base | |
ResetBioseq(void) | CValidErrItem_Base | |
ResetErrIndex(void) | CValidErrItem_Base | inline |
ResetErrorGroup(void) | CValidErrItem_Base | |
ResetErrorName(void) | CValidErrItem_Base | |
ResetFeatureId(void) | CValidErrItem_Base | |
ResetLocation(void) | CValidErrItem_Base | |
ResetLocus_tag(void) | CValidErrItem_Base | |
ResetMsg(void) | CValidErrItem_Base | |
ResetObj_content(void) | CValidErrItem_Base | |
ResetObjDesc(void) | CValidErrItem_Base | |
ResetObjectType(void) | CValidErrItem_Base | inline |
ResetProduct_loc(void) | CValidErrItem_Base | |
ResetSeqOffset(void) | CValidErrItem_Base | inline |
ResetSev(void) | CValidErrItem_Base | inline |
ResetVersion(void) | CValidErrItem_Base | inline |
SetAccession(const TAccession &value) | CValidErrItem_Base | inline |
SetAccession(TAccession &&value) | CValidErrItem_Base | inline |
SetAccession(void) | CValidErrItem_Base | inline |
SetAccnver(const TAccnver &value) | CValidErrItem_Base | inline |
SetAccnver(TAccnver &&value) | CValidErrItem_Base | inline |
SetAccnver(void) | CValidErrItem_Base | inline |
SetAllocFillMode(EAllocFillMode mode) | CObject | static |
SetAllocFillMode(const string &value) | CObject | static |
SetBioseq(const TBioseq &value) | CValidErrItem_Base | inline |
SetBioseq(TBioseq &&value) | CValidErrItem_Base | inline |
SetBioseq(void) | CValidErrItem_Base | inline |
SetContext(CConstRef< CSeq_entry > ctx) | CValidErrItem | inline |
SetErrIndex(TErrIndex value) | CValidErrItem_Base | inline |
SetErrIndex(void) | CValidErrItem_Base | inline |
SetErrorGroup(const TErrorGroup &value) | CValidErrItem_Base | inline |
SetErrorGroup(TErrorGroup &&value) | CValidErrItem_Base | inline |
SetErrorGroup(void) | CValidErrItem_Base | inline |
SetErrorName(const TErrorName &value) | CValidErrItem_Base | inline |
SetErrorName(TErrorName &&value) | CValidErrItem_Base | inline |
SetErrorName(void) | CValidErrItem_Base | inline |
SetFeatureId(const TFeatureId &value) | CValidErrItem_Base | inline |
SetFeatureId(TFeatureId &&value) | CValidErrItem_Base | inline |
SetFeatureId(void) | CValidErrItem_Base | inline |
SetFeatureObjDescFromFields() | CValidErrItem | |
SetLocation(const TLocation &value) | CValidErrItem_Base | inline |
SetLocation(TLocation &&value) | CValidErrItem_Base | inline |
SetLocation(void) | CValidErrItem_Base | inline |
SetLocus_tag(const TLocus_tag &value) | CValidErrItem_Base | inline |
SetLocus_tag(TLocus_tag &&value) | CValidErrItem_Base | inline |
SetLocus_tag(void) | CValidErrItem_Base | inline |
SetMsg(const TMsg &value) | CValidErrItem_Base | inline |
SetMsg(TMsg &&value) | CValidErrItem_Base | inline |
SetMsg(void) | CValidErrItem_Base | inline |
SetObj_content(const TObj_content &value) | CValidErrItem_Base | inline |
SetObj_content(TObj_content &&value) | CValidErrItem_Base | inline |
SetObj_content(void) | CValidErrItem_Base | inline |
SetObjDesc(const TObjDesc &value) | CValidErrItem_Base | inline |
SetObjDesc(TObjDesc &&value) | CValidErrItem_Base | inline |
SetObjDesc(void) | CValidErrItem_Base | inline |
SetObject(const CSerialObject &obj) | CValidErrItem | |
SetObjectType(TObjectType value) | CValidErrItem_Base | inline |
SetObjectType(void) | CValidErrItem_Base | inline |
SetProduct_loc(const TProduct_loc &value) | CValidErrItem_Base | inline |
SetProduct_loc(TProduct_loc &&value) | CValidErrItem_Base | inline |
SetProduct_loc(void) | CValidErrItem_Base | inline |
SetSeqOffset(TSeqOffset value) | CValidErrItem_Base | inline |
SetSeqOffset(void) | CValidErrItem_Base | inline |
SetSev(TSev value) | CValidErrItem_Base | inline |
SetSev(void) | CValidErrItem_Base | inline |
SetVerifyDataGlobal(ESerialVerifyData verify) | CSerialObject | static |
SetVerifyDataThread(ESerialVerifyData verify) | CSerialObject | static |
SetVersion(TVersion value) | CValidErrItem_Base | inline |
SetVersion(void) | CValidErrItem_Base | inline |
sm_DumpEnabled | CDebugDumpable | privatestatic |
sm_Terse | CValidErrItem | privatestatic |
sm_Verbose | CValidErrItem | privatestatic |
TAccession typedef | CValidErrItem_Base | |
TAccnver typedef | CValidErrItem_Base | |
TBioseq typedef | CValidErrItem_Base | |
TCount typedef | CObject | |
TCounter typedef | CObject | |
TErrIndex typedef | CValidErrItem_Base | |
TErrorGroup typedef | CValidErrItem_Base | |
TErrorName typedef | CValidErrItem_Base | |
TFeatureId typedef | CValidErrItem_Base | |
ThrowNullPointerException(void) | CObject | static |
ThrowNullPointerException(const type_info &type) | CObject | static |
ThrowUnassigned(TMemberIndex index) const | CSerialObject | |
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const | CSerialObject | |
TLocation typedef | CValidErrItem_Base | |
TLockerType typedef | CObject | |
TLocus_tag typedef | CValidErrItem_Base | |
TmemberIndex typedef | CValidErrItem_Base | |
TMsg typedef | CValidErrItem_Base | |
TObj_content typedef | CValidErrItem_Base | |
TObjDesc typedef | CValidErrItem_Base | |
TObjectType typedef | CValidErrItem_Base | |
Tparent typedef | CValidErrItem | private |
TProduct_loc typedef | CValidErrItem_Base | |
TSeqOffset typedef | CValidErrItem_Base | |
TSev typedef | CValidErrItem_Base | |
TVersion typedef | CValidErrItem_Base | |
UnassignedByte(void) | CSerialObject | inlinestatic |
UnassignedString(void) | CSerialObject | inlinestatic |
UnassignedStringUTF8(void) | CSerialObject | inlinestatic |
x_GetVerifyData(void) | CSerialObject | privatestatic |
~CDebugDumpable(void) | CDebugDumpable | virtual |
~CObject(void) | CObject | virtual |
~CSerialObject(void) | CSerialObject | virtual |
~CValidErrItem() | CValidErrItem | |
~CValidErrItem_Base(void) | CValidErrItem_Base | virtual |