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NCBI C++ ToolKit
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This is the complete list of members for CValidError_align, including all inherited members.
| AlignmentScorePercentIdOk(const CSeq_align &align) | CValidError_align | privatestatic |
| CValidError_align(CValidError_imp &imp) | CValidError_align | |
| CValidError_base(CValidError_imp &imp) | CValidError_base | private |
| FindSegmentGaps(const TPacked &packed) | CValidError_align | static |
| FindSegmentGaps(const TDenseg &std_segs) | CValidError_align | static |
| FindSegmentGaps(const TStd &denseg, CScope *scope) | CValidError_align | static |
| FindSegmentGaps(const TDendiag &dendiags) | CValidError_align | static |
| GetAppropriateXrefParent(CSeq_entry_Handle seh) | CValidError_base | privatestatic |
| GetCache() | CValidError_base | private |
| IsTpaAlignment(const CDense_seg &denseg, CScope &scope) | CValidError_align | privatestatic |
| IsTpaAlignment(const CSparseAln &sparse_aln, CScope &scope) | CValidError_align | privatestatic |
| m_Imp | CValidError_base | private |
| m_Scope | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSerialObject &obj) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSeq_feat &ft) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CBioseq &sq) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSeq_entry &ctx, const CSeqdesc &ds) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CBioseq_set &set) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSeq_annot &annot) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSeq_graph &graph) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CBioseq &sq, const CSeq_graph &graph) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSeq_align &align) | CValidError_base | private |
| PostErr(EDiagSev sv, EErrType et, const string &msg, const CSeq_entry &entry) | CValidError_base | private |
| TDendiag typedef | CValidError_align | |
| TDenseg typedef | CValidError_align | |
| TDisc typedef | CValidError_align | private |
| TPacked typedef | CValidError_align | |
| TSegmentGapV typedef | CValidError_align | |
| TStd typedef | CValidError_align | |
| ValidateSeqAlign(const CSeq_align &align, int order=-1) | CValidError_align | |
| x_GetIds(const CSeq_align &align, vector< CRef< CSeq_id > > &ids) | CValidError_align | private |
| x_ReportAlignErr(const CSeq_align &align, const CSeq_id &id, const CSeq_id &id_context, size_t segment, size_t pos, EErrType et, EDiagSev sev, const string &prefix, const string &message) | CValidError_align | private |
| x_ReportSegmentGaps(const TSegmentGapV &seggaps, const CSeq_align &align) | CValidError_align | private |
| x_ReportStartMoreThanBiolen(const CSeq_align &align, const CSeq_id &id, const CSeq_id &id_context, size_t segment, size_t pos) | CValidError_align | private |
| x_ReportSumLenStart(const CSeq_align &align, const CSeq_id &id, const CSeq_id &id_context, size_t segment, size_t pos) | CValidError_align | private |
| x_ValidateAlignPercentIdentity(const CSeq_align &align, bool internal_gaps) | CValidError_align | private |
| x_ValidateDendiag(const TDendiag &dendiags, const CSeq_align &align) | CValidError_align | private |
| x_ValidateDenseg(const TDenseg &denseg, const CSeq_align &align) | CValidError_align | private |
| x_ValidateDim(T &obj, const CSeq_align &align, size_t part=0) | CValidError_align | private |
| x_ValidateFastaLike(const TDenseg &denseg, const CSeq_align &align) | CValidError_align | private |
| x_ValidatePacked(const TPacked &packed, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSegmentGap(const TDenseg &denseg, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSegmentGap(const TPacked &packed, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSegmentGap(const TStd &std_segs, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSegmentGap(const TDendiag &dendiags, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSeqId(const CSeq_align &align) | CValidError_align | private |
| x_ValidateSeqLength(const TDenseg &denseg, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSeqLength(const TPacked &packed, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSeqLength(const TStd &std_segs, const CSeq_align &align) | CValidError_align | private |
| x_ValidateSeqLength(const CDense_diag &dendiag, size_t dendiag_num, const CSeq_align &align) | CValidError_align | private |
| x_ValidateStd(const TStd &stdsegs, const CSeq_align &align) | CValidError_align | private |
| x_ValidateStrand(const TDenseg &denseg, const CSeq_align &align) | CValidError_align | private |
| x_ValidateStrand(const TStd &std_segs, const CSeq_align &align) | CValidError_align | private |
| ~CValidError_align() override | CValidError_align | |
| ~CValidError_base() | CValidError_base | privatevirtual |
1.9.0
Modified on Thu May 30 12:27:54 2024 by modify_doxy.py rev. 669887