NCBI C++ ToolKit
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This is the complete list of members for CWinMaskCountsGenerator, including all inherited members.
check_duplicates | CWinMaskCountsGenerator | private |
CWinMaskCountsGenerator(const string &input, const string &output, const string &infmt, const string &sformat, const string &th, Uint4 mem_avail, Uint1 unit_size, Uint8 genome_size, Uint4 min_count, Uint4 max_count, bool check_duplicates, bool use_list, const CWinMaskUtil::CIdSet *ids, const CWinMaskUtil::CIdSet *exclude_ids, bool use_ba, string const &metadata, double min_pct=-1.0, double extend_pct=-1.0, double thres_pct=-1.0, double max_pct=-1.0) | CWinMaskCountsGenerator | |
CWinMaskCountsGenerator(const string &input, CNcbiOstream &os, const string &infmt, const string &sformat, const string &th, Uint4 mem_avail, Uint1 unit_size, Uint8 genome_size, Uint4 min_count, Uint4 max_count, bool check_duplicates, bool use_list, const CWinMaskUtil::CIdSet *ids, const CWinMaskUtil::CIdSet *exclude_ids, bool use_ba, string const &metadata, double min_pct=-1.0, double extend_pct=-1.0, double thres_pct=-1.0, double max_pct=-1.0) | CWinMaskCountsGenerator | |
exclude_ids | CWinMaskCountsGenerator | private |
fastalen(const string &fname) const | CWinMaskCountsGenerator | private |
genome_size | CWinMaskCountsGenerator | private |
has_min_count | CWinMaskCountsGenerator | private |
ids | CWinMaskCountsGenerator | private |
infmt | CWinMaskCountsGenerator | private |
input | CWinMaskCountsGenerator | private |
max_count | CWinMaskCountsGenerator | private |
max_mem | CWinMaskCountsGenerator | private |
min_count | CWinMaskCountsGenerator | private |
no_extra_pass | CWinMaskCountsGenerator | private |
operator()() | CWinMaskCountsGenerator | |
process(Uint4 prefix, Uint1 prefix_size, const vector< string > &input, bool do_output) | CWinMaskCountsGenerator | private |
score_counts | CWinMaskCountsGenerator | private |
t_high | CWinMaskCountsGenerator | private |
th | CWinMaskCountsGenerator | private |
total_ecodes | CWinMaskCountsGenerator | private |
unit_size | CWinMaskCountsGenerator | private |
use_list | CWinMaskCountsGenerator | private |
ustat | CWinMaskCountsGenerator | private |
~CWinMaskCountsGenerator() | CWinMaskCountsGenerator |