NCBI C++ ToolKit
CWinMaskCountsGenerator Member List

This is the complete list of members for CWinMaskCountsGenerator, including all inherited members.

check_duplicatesCWinMaskCountsGeneratorprivate
CWinMaskCountsGenerator(const string &input, const string &output, const string &infmt, const string &sformat, const string &th, Uint4 mem_avail, Uint1 unit_size, Uint8 genome_size, Uint4 min_count, Uint4 max_count, bool check_duplicates, bool use_list, const CWinMaskUtil::CIdSet *ids, const CWinMaskUtil::CIdSet *exclude_ids, bool use_ba, string const &metadata, double min_pct=-1.0, double extend_pct=-1.0, double thres_pct=-1.0, double max_pct=-1.0)CWinMaskCountsGenerator
CWinMaskCountsGenerator(const string &input, CNcbiOstream &os, const string &infmt, const string &sformat, const string &th, Uint4 mem_avail, Uint1 unit_size, Uint8 genome_size, Uint4 min_count, Uint4 max_count, bool check_duplicates, bool use_list, const CWinMaskUtil::CIdSet *ids, const CWinMaskUtil::CIdSet *exclude_ids, bool use_ba, string const &metadata, double min_pct=-1.0, double extend_pct=-1.0, double thres_pct=-1.0, double max_pct=-1.0)CWinMaskCountsGenerator
exclude_idsCWinMaskCountsGeneratorprivate
fastalen(const string &fname) constCWinMaskCountsGeneratorprivate
genome_sizeCWinMaskCountsGeneratorprivate
has_min_countCWinMaskCountsGeneratorprivate
idsCWinMaskCountsGeneratorprivate
infmtCWinMaskCountsGeneratorprivate
inputCWinMaskCountsGeneratorprivate
max_countCWinMaskCountsGeneratorprivate
max_memCWinMaskCountsGeneratorprivate
min_countCWinMaskCountsGeneratorprivate
no_extra_passCWinMaskCountsGeneratorprivate
operator()()CWinMaskCountsGenerator
process(Uint4 prefix, Uint1 prefix_size, const vector< string > &input, bool do_output)CWinMaskCountsGeneratorprivate
score_countsCWinMaskCountsGeneratorprivate
t_highCWinMaskCountsGeneratorprivate
thCWinMaskCountsGeneratorprivate
total_ecodesCWinMaskCountsGeneratorprivate
unit_sizeCWinMaskCountsGeneratorprivate
use_listCWinMaskCountsGeneratorprivate
ustatCWinMaskCountsGeneratorprivate
~CWinMaskCountsGenerator()CWinMaskCountsGenerator
Modified on Fri Sep 20 14:57:02 2024 by modify_doxy.py rev. 669887