NCBI C++ ToolKit
ColumnResidueProfile Member List

This is the complete list of members for ColumnResidueProfile, including all inherited members.

addOccurence(char residue, int row, bool aligned)ColumnResidueProfile
calcInformationContent()ColumnResidueProfile
calculateColumnWeight(char residue, bool countGap, int numRows) constColumnResidueProfile
ColumnResidueProfile()ColumnResidueProfile
findRow(int row)ColumnResidueProfileinlineprivate
getBackgroundResFreq(char res)ColumnResidueProfileprivate
getEaaCode(char stdCode)ColumnResidueProfileinlinestatic
getIndexByConsensus() constColumnResidueProfileinline
getMostFrequentResidue(int &count) constColumnResidueProfile
getNcbiStdCode(char eaa)ColumnResidueProfilestatic
getResidueByRow(int row)ColumnResidueProfile
getResiduesByRow(vector< char > &residues, bool byNcbiStd=true) constColumnResidueProfile
getResidueTypeCount() constColumnResidueProfileinline
getSumCount() constColumnResidueProfile
isAligned(char residue, int row) constColumnResidueProfile
isAligned(int row)ColumnResidueProfile
isAllRowsAligned() constColumnResidueProfile
m_backgroundResFreqColumnResidueProfileprivatestatic
m_indexByConsensusColumnResidueProfileprivate
m_masterInColumnResidueProfileprivate
m_residueRowsMapColumnResidueProfileprivate
m_residuesColumnResidueProfilestatic
m_residuesByRowColumnResidueProfileprivate
m_residueTypeCountColumnResidueProfileprivate
ResidueRowsMap typedefColumnResidueProfile
reweightColumnByRowWeights(const vector< double > &rowWeights, char &heaviestResidue) constColumnResidueProfile
RowStatusPair typedefColumnResidueProfile
setIndexByConsensus(int col)ColumnResidueProfileinline
sumUpColumnWeightsByRow(vector< double > &rowWeights, bool countGap, int numRows) constColumnResidueProfile
useDefaultBackgroundResFreq()ColumnResidueProfileprivatestatic
~ColumnResidueProfile()ColumnResidueProfile
Modified on Sat Apr 13 11:45:07 2024 by modify_doxy.py rev. 669887