DisplayRowFromSequence Class Reference

Search Toolkit Book for DisplayRowFromSequence

#include "sequence_display.hpp"
(Private to src/app/cn3d.)

Inheritance diagram for DisplayRowFromSequence:

Collaboration diagram for DisplayRowFromSequence:

Public Member Functions
	DisplayRowFromSequence (const Sequence *s, unsigned int from, unsigned int to)
virtual	~DisplayRowFromSequence (void)
unsigned int	Width (void) const
DisplayRow *	Clone (const Old2NewAlignmentMap &newAlignments) const
bool	GetCharacterTraitsAt (unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, char *character, Vector *color, bool *drawBackground, Vector *cellBackgroundColor) const
bool	GetSequenceAndIndexAt (unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, const Sequence **sequenceHandle, int *index) const
const Sequence *	GetSequence (void) const
void	SelectedRange (unsigned int from, unsigned int to, BlockMultipleAlignment::eUnalignedJustification justification, bool toggle) const
Public Member Functions inherited from DisplayRow
virtual	~DisplayRow (void)

Public Attributes
const Sequence *const	sequence
const unsigned int	fromIndex
const unsigned int	toIndex

Detailed Description

Definition at line 110 of file sequence_display.hpp.

Constructor & Destructor Documentation

DisplayRowFromSequence()

DisplayRowFromSequence::DisplayRowFromSequence	(	const Sequence *	s,
		unsigned int	from,
		unsigned int	to
	)

Definition at line 111 of file sequence_display.cpp.

References ERRORMSG, Sequence::Length(), and sequence.

Referenced by Clone().

~DisplayRowFromSequence()

virtual DisplayRowFromSequence::~DisplayRowFromSequence ( void  )

inlinevirtual

Definition at line 117 of file sequence_display.hpp.

Member Function Documentation

Clone()

DisplayRow* DisplayRowFromSequence::Clone ( const Old2NewAlignmentMap &  newAlignments ) const

inlinevirtual

Implements DisplayRow.

Definition at line 121 of file sequence_display.hpp.

References DisplayRowFromSequence(), fromIndex, sequence, and toIndex.

GetCharacterTraitsAt()

bool DisplayRowFromSequence::GetCharacterTraitsAt ( unsigned int  column, BlockMultipleAlignment::eUnalignedJustification  justification, char *  character, Vector *  color, bool *  drawBackground, Vector *  cellBackgroundColor  ) const

virtual

Implements DisplayRow.

Definition at line 118 of file sequence_display.cpp.

References color, column, Colors::eHighlight, fromIndex, Colors::Get(), Molecule::GetResidueColor(), GlobalColors(), GlobalMessenger(), Sequence::molecule, sequence, Sequence::sequenceString, toIndex, and tolower().

GetSequence()

const Sequence* DisplayRowFromSequence::GetSequence ( void  ) const

inlinevirtual

Implements DisplayRow.

Definition at line 130 of file sequence_display.hpp.

References sequence.

GetSequenceAndIndexAt()

bool DisplayRowFromSequence::GetSequenceAndIndexAt ( unsigned int  column, BlockMultipleAlignment::eUnalignedJustification  justification, const Sequence **  sequenceHandle, int *  index  ) const

virtual

Implements DisplayRow.

Definition at line 141 of file sequence_display.cpp.

References column, fromIndex, sequence, and toIndex.

SelectedRange()

void DisplayRowFromSequence::SelectedRange ( unsigned int  from, unsigned int  to, BlockMultipleAlignment::eUnalignedJustification  justification, bool  toggle  ) const

virtual

Implements DisplayRow.

Definition at line 154 of file sequence_display.cpp.

References Messenger::AddHighlights(), fromIndex, GlobalMessenger(), sequence, Messenger::ToggleHighlights(), and toIndex.

Width()

unsigned int DisplayRowFromSequence::Width ( void  ) const

inlinevirtual

Implements DisplayRow.

Definition at line 119 of file sequence_display.hpp.

References fromIndex, and toIndex.

Member Data Documentation

fromIndex

const unsigned int DisplayRowFromSequence::fromIndex

Definition at line 114 of file sequence_display.hpp.

Referenced by Clone(), GetCharacterTraitsAt(), SequenceDisplay::GetDisplayCoordinates(), GetSequenceAndIndexAt(), SelectedRange(), and Width().

sequence

const Sequence* const DisplayRowFromSequence::sequence

Definition at line 113 of file sequence_display.hpp.

Referenced by Clone(), DisplayRowFromSequence(), GetCharacterTraitsAt(), GetSequence(), GetSequenceAndIndexAt(), and SelectedRange().

toIndex

const unsigned int DisplayRowFromSequence::toIndex

Definition at line 114 of file sequence_display.hpp.

Referenced by Clone(), GetCharacterTraitsAt(), GetSequenceAndIndexAt(), SelectedRange(), and Width().

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The documentation for this class was generated from the following files:

• src/app/cn3d/sequence_display.hpp
• src/app/cn3d/sequence_display.cpp