Edit Saver Interface. More...

#include <objmgr/edit_saver.hpp>

Inheritance diagram for IEditSaver:

Collaboration diagram for IEditSaver:

Public Types
enum	ECallMode { eDo , eUndo }
	This flag can be used for optimization purpose. More...

typedef set< CSeq_id_Handle >	TIds

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
virtual	~IEditSaver ()

virtual void	BeginTransaction ()=0
	Called when a transaction has just been started. More...

virtual void	CommitTransaction ()=0
	Called when a transaction is finished. More...

virtual void	RollbackTransaction ()=0
	Called when a transaction should be undone. More...

virtual void	AddDescr (const CBioseq_Handle &, const CSeq_descr &, ECallMode)=0
	Description operations. More...

virtual void	SetDescr (const CBioseq_Handle &, const CSeq_descr &, ECallMode)=0

virtual void	ResetDescr (const CBioseq_Handle &, ECallMode)=0

virtual void	AddDesc (const CBioseq_Handle &, const CSeqdesc &, ECallMode)=0

virtual void	RemoveDesc (const CBioseq_Handle &, const CSeqdesc &, ECallMode)=0

virtual void	SetSeqInst (const CBioseq_Handle &, const CSeq_inst &, ECallMode)=0
	CSeq_inst operatoions. More...

virtual void	SetSeqInstRepr (const CBioseq_Handle &, CSeq_inst::TRepr, ECallMode)=0

virtual void	SetSeqInstMol (const CBioseq_Handle &, CSeq_inst::TMol, ECallMode)=0

virtual void	SetSeqInstLength (const CBioseq_Handle &, CSeq_inst::TLength, ECallMode)=0

virtual void	SetSeqInstFuzz (const CBioseq_Handle &handle, const CSeq_inst::TFuzz &fuzz, ECallMode)=0

virtual void	SetSeqInstTopology (const CBioseq_Handle &handle, CSeq_inst::TTopology topology, ECallMode)=0

virtual void	SetSeqInstStrand (const CBioseq_Handle &handle, CSeq_inst::TStrand strand, ECallMode)=0

virtual void	SetSeqInstExt (const CBioseq_Handle &handle, const CSeq_inst::TExt &ext, ECallMode)=0

virtual void	SetSeqInstHist (const CBioseq_Handle &handle, const CSeq_inst::THist &hist, ECallMode)=0

virtual void	SetSeqInstSeq_data (const CBioseq_Handle &handle, const CSeq_inst::TSeq_data &data, ECallMode)=0

virtual void	ResetSeqInst (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstRepr (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstMol (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstLength (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstFuzz (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstTopology (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstStrand (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstExt (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstHist (const CBioseq_Handle &, ECallMode)=0

virtual void	ResetSeqInstSeq_data (const CBioseq_Handle &, ECallMode)=0

virtual void	AddId (const CBioseq_Handle &, const CSeq_id_Handle &, ECallMode)=0
	ID operation. More...

virtual void	RemoveId (const CBioseq_Handle &, const CSeq_id_Handle &, ECallMode)=0

virtual void	ResetIds (const CBioseq_Handle &, const TIds &, ECallMode)=0

virtual void	AddDescr (const CBioseq_set_Handle &, const CSeq_descr &, ECallMode)=0

virtual void	SetDescr (const CBioseq_set_Handle &, const CSeq_descr &, ECallMode)=0

virtual void	ResetDescr (const CBioseq_set_Handle &, ECallMode)=0

virtual void	AddDesc (const CBioseq_set_Handle &, const CSeqdesc &, ECallMode)=0

virtual void	RemoveDesc (const CBioseq_set_Handle &, const CSeqdesc &, ECallMode)=0

virtual void	SetBioseqSetId (const CBioseq_set_Handle &, const CBioseq_set::TId &, ECallMode)=0

virtual void	SetBioseqSetColl (const CBioseq_set_Handle &, const CBioseq_set::TColl &, ECallMode)=0

virtual void	SetBioseqSetLevel (const CBioseq_set_Handle &, CBioseq_set::TLevel, ECallMode)=0

virtual void	SetBioseqSetClass (const CBioseq_set_Handle &, CBioseq_set::TClass, ECallMode)=0

virtual void	SetBioseqSetRelease (const CBioseq_set_Handle &, const CBioseq_set::TRelease &, ECallMode)=0

virtual void	SetBioseqSetDate (const CBioseq_set_Handle &, const CBioseq_set::TDate &, ECallMode)=0

virtual void	ResetBioseqSetId (const CBioseq_set_Handle &, ECallMode)=0

virtual void	ResetBioseqSetColl (const CBioseq_set_Handle &, ECallMode)=0

virtual void	ResetBioseqSetLevel (const CBioseq_set_Handle &, ECallMode)=0

virtual void	ResetBioseqSetClass (const CBioseq_set_Handle &, ECallMode)=0

virtual void	ResetBioseqSetRelease (const CBioseq_set_Handle &, ECallMode)=0

virtual void	ResetBioseqSetDate (const CBioseq_set_Handle &, ECallMode)=0

virtual void	Attach (const CBioObjectId &old_id, const CSeq_entry_Handle &entry, const CBioseq_Handle &what, ECallMode)=0

virtual void	Attach (const CBioObjectId &old_id, const CSeq_entry_Handle &entry, const CBioseq_set_Handle &what, ECallMode)=0

virtual void	Detach (const CSeq_entry_Handle &entry, const CBioseq_Handle &what, ECallMode)=0

virtual void	Detach (const CSeq_entry_Handle &entry, const CBioseq_set_Handle &what, ECallMode)=0

virtual void	Attach (const CSeq_entry_Handle &entry, const CSeq_annot_Handle &what, ECallMode)=0

virtual void	Remove (const CSeq_entry_Handle &entry, const CSeq_annot_Handle &what, ECallMode)=0

virtual void	Attach (const CBioseq_set_Handle &handle, const CSeq_entry_Handle &entry, int Index, ECallMode)=0

virtual void	Remove (const CBioseq_set_Handle &handle, const CSeq_entry_Handle &, int Index, ECallMode)=0

virtual void	Replace (const CSeq_feat_Handle &handle, const CSeq_feat &old_value, ECallMode)=0

virtual void	Replace (const CSeq_align_Handle &handle, const CSeq_align &old_value, ECallMode)=0

virtual void	Replace (const CSeq_graph_Handle &handle, const CSeq_graph &old_value, ECallMode)=0

virtual void	Add (const CSeq_annot_Handle &handle, const CSeq_feat &obj, ECallMode)=0

virtual void	Add (const CSeq_annot_Handle &handle, const CSeq_align &obj, ECallMode)=0

virtual void	Add (const CSeq_annot_Handle &handle, const CSeq_graph &obj, ECallMode)=0

virtual void	Remove (const CSeq_annot_Handle &handle, const CSeq_feat &old_value, ECallMode)=0

virtual void	Remove (const CSeq_annot_Handle &handle, const CSeq_align &old_value, ECallMode)=0

virtual void	Remove (const CSeq_annot_Handle &handle, const CSeq_graph &old_value, ECallMode)=0

virtual void	RemoveTSE (const CTSE_Handle &handle, ECallMode)=0

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Additional Inherited Members
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Edit Saver Interface.

An instance of a class which implements this interface can be attached to a TSE in order to catch modifications which are being done on the objects associated with this TSE This instance is attached to the TSE using the CDataLoaderPatcher class

See also: CDataLoaderPatcher, CScopeTransaction

Definition at line 71 of file edit_saver.hpp.

Member Typedef Documentation

◆ TIds

typedef set<CSeq_id_Handle> IEditSaver::TIds

Definition at line 146 of file edit_saver.hpp.

Member Enumeration Documentation

◆ ECallMode

enum IEditSaver::ECallMode

This flag can be used for optimization purpose.

Enumerator
eDo	The method is called when a modification has just been done.
eUndo	The method is called when a modification has just been undone.

Definition at line 76 of file edit_saver.hpp.

Constructor & Destructor Documentation

◆ ~IEditSaver()

IEditSaver::~IEditSaver ( )

virtual

Definition at line 40 of file edit_saver.cpp.

Member Function Documentation

◆ Add() [1/3]

virtual void IEditSaver::Add	(	const CSeq_annot_Handle &	handle,
		const CSeq_align &	obj,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Add() [2/3]

virtual void IEditSaver::Add	(	const CSeq_annot_Handle &	handle,
		const CSeq_feat &	obj,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by CSeq_annot_Replace_EditCommand< Handle >::Do(), CSeq_annot_Add_EditCommand< Handle >::Do(), and CSeq_annot_Remove_EditCommand< Handle >::Undo().

◆ Add() [3/3]

virtual void IEditSaver::Add	(	const CSeq_annot_Handle &	handle,
		const CSeq_graph &	obj,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ AddDesc() [1/2]

virtual void IEditSaver::AddDesc	(	const CBioseq_Handle &	,
		const CSeqdesc &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DescDBFunc< Handle >::Add(), and DescDBFunc< CSeq_entry_EditHandle >::Add().

◆ AddDesc() [2/2]

virtual void IEditSaver::AddDesc	(	const CBioseq_set_Handle &	,
		const CSeqdesc &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ AddDescr() [1/2]

virtual void IEditSaver::AddDescr	(	const CBioseq_Handle &	,
		const CSeq_descr &	,
		ECallMode
	)

pure virtual

Description operations.

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DBFunc< Handle, CSeq_descr >::Add(), and DBFunc< CSeq_entry_EditHandle, CSeq_descr >::Add().

◆ AddDescr() [2/2]

virtual void IEditSaver::AddDescr	(	const CBioseq_set_Handle &	,
		const CSeq_descr &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ AddId()

virtual void IEditSaver::AddId	(	const CBioseq_Handle &	,
		const CSeq_id_Handle &	,
		ECallMode
	)

pure virtual

ID operation.

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by AddRemoveIdEditAction< add >::DoInDB(), CResetIds_EditCommand::Undo(), and AddRemoveIdEditAction< false >::UndoInDB().

◆ Attach() [1/4]

virtual void IEditSaver::Attach	(	const CBioObjectId &	old_id,
		const CSeq_entry_Handle &	entry,
		const CBioseq_Handle &	what,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by CAttachEntry_EditCommand< Entry >::Do(), CSeq_entry_Select_EditCommand< Handle, Data >::Do(), CAttachAnnot_EditCommand< Annot >::Do(), CSeq_entry_SelectNone_EditCommand::Undo(), CSeq_entry_Remove_EditCommand::Undo(), RemoveAction< CSeq_annot_EditHandle >::UndoInDB(), RemoveAction< CBioseq_EditHandle >::UndoInDB(), and RemoveAction< CBioseq_set_EditHandle >::UndoInDB().

◆ Attach() [2/4]

virtual void IEditSaver::Attach	(	const CBioObjectId &	old_id,
		const CSeq_entry_Handle &	entry,
		const CBioseq_set_Handle &	what,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Attach() [3/4]

virtual void IEditSaver::Attach	(	const CBioseq_set_Handle &	handle,
		const CSeq_entry_Handle &	entry,
		int	Index,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Attach() [4/4]

virtual void IEditSaver::Attach	(	const CSeq_entry_Handle &	entry,
		const CSeq_annot_Handle &	what,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ BeginTransaction()

virtual void IEditSaver::BeginTransaction ( )

pure virtual

Called when a transaction has just been started.

Implemented in CEditsSaver.

Referenced by CScopeTransaction_Impl::AddEditSaver().

◆ CommitTransaction()

virtual void IEditSaver::CommitTransaction ( )

pure virtual

Called when a transaction is finished.

Implemented in CEditsSaver.

Referenced by CScopeTransaction_Impl::Commit().

◆ Detach() [1/2]

virtual void IEditSaver::Detach	(	const CSeq_entry_Handle &	entry,
		const CBioseq_Handle &	what,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by CSeq_entry_SelectNone_EditCommand::Do(), RemoveAction< CBioseq_EditHandle >::DoInDB(), RemoveAction< CBioseq_set_EditHandle >::DoInDB(), and CSeq_entry_Select_EditCommand< Handle, Data >::Undo().

◆ Detach() [2/2]

virtual void IEditSaver::Detach	(	const CSeq_entry_Handle &	entry,
		const CBioseq_set_Handle &	what,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Remove() [1/5]

virtual void IEditSaver::Remove	(	const CBioseq_set_Handle &	handle,
		const CSeq_entry_Handle &	,
		int	Index,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Remove() [2/5]

virtual void IEditSaver::Remove	(	const CSeq_annot_Handle &	handle,
		const CSeq_align &	old_value,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Remove() [3/5]

virtual void IEditSaver::Remove	(	const CSeq_annot_Handle &	handle,
		const CSeq_feat &	old_value,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Remove() [4/5]

virtual void IEditSaver::Remove	(	const CSeq_annot_Handle &	handle,
		const CSeq_graph &	old_value,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Remove() [5/5]

virtual void IEditSaver::Remove	(	const CSeq_entry_Handle &	entry,
		const CSeq_annot_Handle &	what,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by CSeq_annot_Remove_EditCommand< Handle >::Do(), CSeq_entry_Remove_EditCommand::Do(), RemoveAction< CSeq_annot_EditHandle >::DoInDB(), CAttachEntry_EditCommand< Entry >::Undo(), CSeq_annot_Replace_EditCommand< Handle >::Undo(), CSeq_annot_Add_EditCommand< Handle >::Undo(), and CAttachAnnot_EditCommand< Annot >::Undo().

◆ RemoveDesc() [1/2]

virtual void IEditSaver::RemoveDesc	(	const CBioseq_Handle &	,
		const CSeqdesc &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DescDBFunc< Handle >::Remove(), and DescDBFunc< CSeq_entry_EditHandle >::Remove().

◆ RemoveDesc() [2/2]

virtual void IEditSaver::RemoveDesc	(	const CBioseq_set_Handle &	,
		const CSeqdesc &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ RemoveId()

virtual void IEditSaver::RemoveId	(	const CBioseq_Handle &	,
		const CSeq_id_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by AddRemoveIdEditAction< false >::DoInDB(), and AddRemoveIdEditAction< add >::UndoInDB().

◆ RemoveTSE()

virtual void IEditSaver::RemoveTSE	(	const CTSE_Handle &	handle,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver.

Referenced by CRemoveTSE_EditCommand::Do().

◆ Replace() [1/3]

virtual void IEditSaver::Replace	(	const CSeq_align_Handle &	handle,
		const CSeq_align &	old_value,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ Replace() [2/3]

virtual void IEditSaver::Replace	(	const CSeq_feat_Handle &	handle,
		const CSeq_feat &	old_value,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by CSeq_annot_Replace_EditCommand< Handle >::Do(), and CSeq_annot_Replace_EditCommand< Handle >::Undo().

◆ Replace() [3/3]

virtual void IEditSaver::Replace	(	const CSeq_graph_Handle &	handle,
		const CSeq_graph &	old_value,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetBioseqSetClass()

virtual void IEditSaver::ResetBioseqSetClass	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetBioseqSetColl()

virtual void IEditSaver::ResetBioseqSetColl	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetBioseqSetDate()

virtual void IEditSaver::ResetBioseqSetDate	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetBioseqSetId()

virtual void IEditSaver::ResetBioseqSetId	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetBioseqSetLevel()

virtual void IEditSaver::ResetBioseqSetLevel	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetBioseqSetRelease()

virtual void IEditSaver::ResetBioseqSetRelease	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetDescr() [1/2]

virtual void IEditSaver::ResetDescr	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DBFunc< Handle, CSeq_descr >::Reset(), and DBFunc< CSeq_entry_EditHandle, CSeq_descr >::Reset().

◆ ResetDescr() [2/2]

virtual void IEditSaver::ResetDescr	(	const CBioseq_set_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetIds()

virtual void IEditSaver::ResetIds	(	const CBioseq_Handle &	,
		const TIds &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by CResetIds_EditCommand::Do().

◆ ResetSeqInst()

virtual void IEditSaver::ResetSeqInst	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DBFunc< CBioseq_EditHandle, CSeq_inst >::Reset().

◆ ResetSeqInstExt()

virtual void IEditSaver::ResetSeqInstExt	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstFuzz()

virtual void IEditSaver::ResetSeqInstFuzz	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstHist()

virtual void IEditSaver::ResetSeqInstHist	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstLength()

virtual void IEditSaver::ResetSeqInstLength	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstMol()

virtual void IEditSaver::ResetSeqInstMol	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstRepr()

virtual void IEditSaver::ResetSeqInstRepr	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstSeq_data()

virtual void IEditSaver::ResetSeqInstSeq_data	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstStrand()

virtual void IEditSaver::ResetSeqInstStrand	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ ResetSeqInstTopology()

virtual void IEditSaver::ResetSeqInstTopology	(	const CBioseq_Handle &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ RollbackTransaction()

virtual void IEditSaver::RollbackTransaction ( )

pure virtual

Called when a transaction should be undone.

Implemented in CEditsSaver.

Referenced by CScopeTransaction_Impl::RollBack().

◆ SetBioseqSetClass()

virtual void IEditSaver::SetBioseqSetClass	(	const CBioseq_set_Handle &	,
		CBioseq_set::TClass	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetBioseqSetColl()

virtual void IEditSaver::SetBioseqSetColl	(	const CBioseq_set_Handle &	,
		const CBioseq_set::TColl &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetBioseqSetDate()

virtual void IEditSaver::SetBioseqSetDate	(	const CBioseq_set_Handle &	,
		const CBioseq_set::TDate &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetBioseqSetId()

virtual void IEditSaver::SetBioseqSetId	(	const CBioseq_set_Handle &	,
		const CBioseq_set::TId &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetBioseqSetLevel()

virtual void IEditSaver::SetBioseqSetLevel	(	const CBioseq_set_Handle &	,
		CBioseq_set::TLevel	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetBioseqSetRelease()

virtual void IEditSaver::SetBioseqSetRelease	(	const CBioseq_set_Handle &	,
		const CBioseq_set::TRelease &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetDescr() [1/2]

virtual void IEditSaver::SetDescr	(	const CBioseq_Handle &	,
		const CSeq_descr &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DBFunc< Handle, CSeq_descr >::Set(), and DBFunc< CSeq_entry_EditHandle, CSeq_descr >::Set().

◆ SetDescr() [2/2]

virtual void IEditSaver::SetDescr	(	const CBioseq_set_Handle &	,
		const CSeq_descr &	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInst()

virtual void IEditSaver::SetSeqInst	(	const CBioseq_Handle &	,
		const CSeq_inst &	,
		ECallMode
	)

pure virtual

CSeq_inst operatoions.

Implemented in CUnsupportedEditSaver, and CEditsSaver.

Referenced by DBFunc< CBioseq_EditHandle, CSeq_inst >::Set().

◆ SetSeqInstExt()

virtual void IEditSaver::SetSeqInstExt	(	const CBioseq_Handle &	handle,
		const CSeq_inst::TExt &	ext,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstFuzz()

virtual void IEditSaver::SetSeqInstFuzz	(	const CBioseq_Handle &	handle,
		const CSeq_inst::TFuzz &	fuzz,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstHist()

virtual void IEditSaver::SetSeqInstHist	(	const CBioseq_Handle &	handle,
		const CSeq_inst::THist &	hist,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstLength()

virtual void IEditSaver::SetSeqInstLength	(	const CBioseq_Handle &	,
		CSeq_inst::TLength	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstMol()

virtual void IEditSaver::SetSeqInstMol	(	const CBioseq_Handle &	,
		CSeq_inst::TMol	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstRepr()

virtual void IEditSaver::SetSeqInstRepr	(	const CBioseq_Handle &	,
		CSeq_inst::TRepr	,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstSeq_data()

virtual void IEditSaver::SetSeqInstSeq_data	(	const CBioseq_Handle &	handle,
		const CSeq_inst::TSeq_data &	data,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstStrand()

virtual void IEditSaver::SetSeqInstStrand	(	const CBioseq_Handle &	handle,
		CSeq_inst::TStrand	strand,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

◆ SetSeqInstTopology()

virtual void IEditSaver::SetSeqInstTopology	(	const CBioseq_Handle &	handle,
		CSeq_inst::TTopology	topology,
		ECallMode
	)

pure virtual

Implemented in CUnsupportedEditSaver, and CEditsSaver.

The documentation for this class was generated from the following files:

include/objmgr/edit_saver.hpp
src/objmgr/edit_saver.cpp

Public Types

Public Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TIds

Member Enumeration Documentation

◆ ECallMode

Constructor & Destructor Documentation

◆ ~IEditSaver()

Member Function Documentation

◆ Add() [1/3]

◆ Add() [2/3]

◆ Add() [3/3]

◆ AddDesc() [1/2]

◆ AddDesc() [2/2]

◆ AddDescr() [1/2]

◆ AddDescr() [2/2]

◆ AddId()

◆ Attach() [1/4]

◆ Attach() [2/4]

◆ Attach() [3/4]

◆ Attach() [4/4]

◆ BeginTransaction()

◆ CommitTransaction()

◆ Detach() [1/2]

◆ Detach() [2/2]

◆ Remove() [1/5]

◆ Remove() [2/5]

◆ Remove() [3/5]

◆ Remove() [4/5]

◆ Remove() [5/5]

◆ RemoveDesc() [1/2]

◆ RemoveDesc() [2/2]

◆ RemoveId()

◆ RemoveTSE()

◆ Replace() [1/3]

◆ Replace() [2/3]

◆ Replace() [3/3]

◆ ResetBioseqSetClass()

◆ ResetBioseqSetColl()

◆ ResetBioseqSetDate()

◆ ResetBioseqSetId()

◆ ResetBioseqSetLevel()

◆ ResetBioseqSetRelease()

◆ ResetDescr() [1/2]

◆ ResetDescr() [2/2]

◆ ResetIds()

◆ ResetSeqInst()

◆ ResetSeqInstExt()

◆ ResetSeqInstFuzz()

◆ ResetSeqInstHist()

◆ ResetSeqInstLength()

◆ ResetSeqInstMol()

◆ ResetSeqInstRepr()

◆ ResetSeqInstSeq_data()

◆ ResetSeqInstStrand()

◆ ResetSeqInstTopology()

◆ RollbackTransaction()

◆ SetBioseqSetClass()

◆ SetBioseqSetColl()

◆ SetBioseqSetDate()

◆ SetBioseqSetId()

◆ SetBioseqSetLevel()

◆ SetBioseqSetRelease()

◆ SetDescr() [1/2]

◆ SetDescr() [2/2]

◆ SetSeqInst()

◆ SetSeqInstExt()

◆ SetSeqInstFuzz()

◆ SetSeqInstHist()

◆ SetSeqInstLength()

◆ SetSeqInstMol()

◆ SetSeqInstRepr()

◆ SetSeqInstSeq_data()

◆ SetSeqInstStrand()

◆ SetSeqInstTopology()