#include <objtools/format/formatter.hpp>

Inheritance diagram for IFormatter:

Collaboration diagram for IFormatter:

Public Member Functions
virtual void	Start (IFlatTextOStream &text_os)=0

virtual void	StartSection (const CStartSectionItem &ssec, IFlatTextOStream &text_os)=0

virtual void	EndSection (const CEndSectionItem &esec, IFlatTextOStream &text_os)=0

virtual void	End (IFlatTextOStream &text_os)=0

virtual void	Format (const IFlatItem &item, IFlatTextOStream &text_os)=0

virtual void	FormatLocus (const CLocusItem &locus, IFlatTextOStream &text_os)=0

virtual void	FormatDefline (const CDeflineItem &defline, IFlatTextOStream &text_os)=0

virtual void	FormatAccession (const CAccessionItem &acc, IFlatTextOStream &text_os)=0

virtual void	FormatVersion (const CVersionItem &version, IFlatTextOStream &text_os)=0

virtual void	FormatKeywords (const CKeywordsItem &keys, IFlatTextOStream &text_os)=0

virtual void	FormatSource (const CSourceItem &keys, IFlatTextOStream &text_os)=0

virtual void	FormatReference (const CReferenceItem &keys, IFlatTextOStream &text_os)=0

virtual void	FormatCache (const CCacheItem &csh, IFlatTextOStream &text_os)=0

virtual void	FormatComment (const CCommentItem &comment, IFlatTextOStream &text_os)=0

virtual void	FormatBasecount (const CBaseCountItem &bc, IFlatTextOStream &text_os)=0

virtual void	FormatSequence (const CSequenceItem &seq, IFlatTextOStream &text_os)=0

virtual void	FormatFeatHeader (const CFeatHeaderItem &fh, IFlatTextOStream &text_os)=0

virtual void	FormatFeature (const CFeatureItemBase &feat, IFlatTextOStream &text_os)=0

virtual void	FormatAlignment (const CAlignmentItem &aln, IFlatTextOStream &text_os)=0

virtual void	FormatSegment (const CSegmentItem &seg, IFlatTextOStream &text_os)=0

virtual void	FormatDate (const CDateItem &date, IFlatTextOStream &text_os)=0

virtual void	FormatDBSource (const CDBSourceItem &dbs, IFlatTextOStream &text_os)=0

virtual void	FormatPrimary (const CPrimaryItem &prim, IFlatTextOStream &text_os)=0

virtual void	FormatContig (const CContigItem &contig, IFlatTextOStream &text_os)=0

virtual void	FormatWGS (const CWGSItem &wgs, IFlatTextOStream &text_os)=0

virtual void	FormatTSA (const CTSAItem &wgs, IFlatTextOStream &text_os)=0

virtual void	FormatGenome (const CGenomeItem &genome, IFlatTextOStream &text_os)=0

virtual void	FormatOrigin (const COriginItem &origin, IFlatTextOStream &text_os)=0

virtual void	FormatGap (const CGapItem &gap, IFlatTextOStream &text_os)=0

virtual void	FormatGenomeProject (const CGenomeProjectItem &, IFlatTextOStream &)

virtual void	FormatHtmlAnchor (const CHtmlAnchorItem &, IFlatTextOStream &)

virtual	~IFormatter (void)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Additional Inherited Members
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...