NCBI C++ ToolKit
Public Member Functions | List of all members
IHTMLFormatter Class Referenceabstract

Search Toolkit Book for IHTMLFormatter

#include <objtools/format/flat_file_config.hpp>

+ Inheritance diagram for IHTMLFormatter:
+ Collaboration diagram for IHTMLFormatter:

Public Member Functions

virtual ~IHTMLFormatter ()
 
virtual void FormatProteinId (string &str, const CSeq_id &seq_id, const string &prot_id) const =0
 
virtual void FormatTranscriptId (string &str, const CSeq_id &seq_id, const string &nuc_id) const =0
 
virtual void FormatNucSearch (CNcbiOstream &os, const string &id) const =0
 
virtual void FormatNucId (string &str, const CSeq_id &seq_id, TIntId gi, const string &acc_id) const =0
 
virtual void FormatTaxid (string &str, const TTaxId taxid, const string &taxname) const =0
 
virtual void FormatLocation (string &str, const CSeq_loc &loc, TIntId gi, const string &visible_text) const =0
 
virtual void FormatModelEvidence (string &str, const SModelEvidance &me) const =0
 
virtual void FormatTranscript (string &str, const string &name) const =0
 
virtual void FormatGeneralId (CNcbiOstream &os, const string &id) const =0
 
virtual void FormatGapLink (CNcbiOstream &os, TSeqPos gap_size, const string &id, bool is_prot) const =0
 
virtual void FormatUniProtId (string &str, const string &prot_id) const =0
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 80 of file flat_file_config.hpp.

Constructor & Destructor Documentation

◆ ~IHTMLFormatter()

virtual IHTMLFormatter::~IHTMLFormatter ( )
inlinevirtual

Definition at line 83 of file flat_file_config.hpp.

Member Function Documentation

◆ FormatGapLink()

virtual void IHTMLFormatter::FormatGapLink ( CNcbiOstream os,
TSeqPos  gap_size,
const string id,
bool  is_prot 
) const
pure virtual

◆ FormatGeneralId()

virtual void IHTMLFormatter::FormatGeneralId ( CNcbiOstream os,
const string id 
) const
pure virtual

Implemented in CHTMLFormatterEx, and CHTMLEmptyFormatter.

◆ FormatLocation()

virtual void IHTMLFormatter::FormatLocation ( string str,
const CSeq_loc loc,
TIntId  gi,
const string visible_text 
) const
pure virtual

Implemented in CHTMLFormatterEx, and CHTMLEmptyFormatter.

Referenced by s_GetLinkFeatureKey().

◆ FormatModelEvidence()

virtual void IHTMLFormatter::FormatModelEvidence ( string str,
const SModelEvidance me 
) const
pure virtual

Implemented in CHTMLFormatterEx, and CHTMLEmptyFormatter.

◆ FormatNucId()

virtual void IHTMLFormatter::FormatNucId ( string str,
const CSeq_id seq_id,
TIntId  gi,
const string acc_id 
) const
pure virtual

◆ FormatNucSearch()

virtual void IHTMLFormatter::FormatNucSearch ( CNcbiOstream os,
const string id 
) const
pure virtual

Implemented in CHTMLFormatterEx, and CHTMLEmptyFormatter.

◆ FormatProteinId()

virtual void IHTMLFormatter::FormatProteinId ( string str,
const CSeq_id seq_id,
const string prot_id 
) const
pure virtual

Implemented in CHTMLEmptyFormatter, and CHTMLFormatterEx.

◆ FormatTaxid()

virtual void IHTMLFormatter::FormatTaxid ( string str,
const TTaxId  taxid,
const string taxname 
) const
pure virtual

◆ FormatTranscript()

virtual void IHTMLFormatter::FormatTranscript ( string str,
const string name 
) const
pure virtual

Implemented in CHTMLFormatterEx, and CHTMLEmptyFormatter.

◆ FormatTranscriptId()

virtual void IHTMLFormatter::FormatTranscriptId ( string str,
const CSeq_id seq_id,
const string nuc_id 
) const
pure virtual

Implemented in CHTMLEmptyFormatter, and CHTMLFormatterEx.

◆ FormatUniProtId()

virtual void IHTMLFormatter::FormatUniProtId ( string str,
const string prot_id 
) const
pure virtual

The documentation for this class was generated from the following file:
Modified on Fri Sep 20 14:58:25 2024 by modify_doxy.py rev. 669887