IModifyBiosourceQuals Class Reference

Search Toolkit Book for IModifyBiosourceQuals

#include <gui/packages/pkg_sequence_edit/modify_bsrc_interface.hpp>

Inheritance diagram for IModifyBiosourceQuals:

Public Member Functions
virtual	~IModifyBiosourceQuals ()

Protected Member Functions
void	x_ApplyToSeqAndFeat (CCmdComposite *composite)
void	x_ApplyToDescriptors (const objects::CSeq_entry &se, CCmdComposite *composite)
CRef< CCmdComposite >	x_GetCommand (objects::CSeq_entry_Handle tse, const string &title)

Protected Attributes
objects::CSeq_entry_Handle	m_Seh

Private Member Functions
virtual bool	x_ApplyToBioSource (objects::CBioSource &biosource)=0

Detailed Description

Definition at line 40 of file modify_bsrc_interface.hpp.

Constructor & Destructor Documentation

~IModifyBiosourceQuals()

virtual IModifyBiosourceQuals::~IModifyBiosourceQuals ( )

inlinevirtual

Definition at line 43 of file modify_bsrc_interface.hpp.

Member Function Documentation

x_ApplyToBioSource()

virtual bool IModifyBiosourceQuals::x_ApplyToBioSource ( objects::CBioSource &  biosource )

privatepure virtual

Implemented in CStrainSerotypeInfluenza, CConsolidateLikeMods, CRemoveSrcNotes, CSplitPrimerSets, CMergePrimerSets, CSwapPrimerNameSeq, CPCRPrimerFixI, CPCRPrimerTrimJunk, CParseCollectionDateFormats, CGenusSpeciesFixup, CFixStructuredVouchers, and CFixOrgModInst.

Referenced by x_ApplyToDescriptors(), and x_ApplyToSeqAndFeat().

x_ApplyToDescriptors()

void IModifyBiosourceQuals::x_ApplyToDescriptors ( const objects::CSeq_entry &  se, CCmdComposite *  composite  )

protected

Definition at line 55 of file modify_bsrc_interface.cpp.

References CCmdComposite::AddCommand(), CSerialObject::Assign(), cmd, FOR_EACH_SEQDESC_ON_SEQENTRY, FOR_EACH_SEQENTRY_ON_SEQSET, CSeq_entry_Base::GetSet(), CSeq_entry_Base::IsSet(), m_Seh, CSeqdesc_Base::SetSource(), and x_ApplyToBioSource().

Referenced by x_ApplyToSeqAndFeat().

x_ApplyToSeqAndFeat()

void IModifyBiosourceQuals::x_ApplyToSeqAndFeat ( CCmdComposite *  composite )

protected

Definition at line 41 of file modify_bsrc_interface.cpp.

References CCmdComposite::AddCommand(), CSerialObject::Assign(), cmd, CSeqFeatData_Base::e_Biosrc, m_Seh, CSeq_feat_Base::SetData(), x_ApplyToBioSource(), and x_ApplyToDescriptors().

Referenced by CStrainSerotypeInfluenza::GetCommand(), and x_GetCommand().

x_GetCommand()

CRef< CCmdComposite > IModifyBiosourceQuals::x_GetCommand ( objects::CSeq_entry_Handle  tse, const string &  title  )

protected

Definition at line 76 of file modify_bsrc_interface.cpp.

References m_Seh, and x_ApplyToSeqAndFeat().

Referenced by CFixOrgModInst::GetCommand(), CFixStructuredVouchers::GetCommand(), CGenusSpeciesFixup::GetCommand(), CPCRPrimerTrimJunk::GetCommand(), CPCRPrimerFixI::GetCommand(), CSwapPrimerNameSeq::GetCommand(), CMergePrimerSets::GetCommand(), CSplitPrimerSets::GetCommand(), CRemoveSrcNotes::GetCommand(), and CConsolidateLikeMods::GetCommand().

Member Data Documentation

m_Seh

objects::CSeq_entry_Handle IModifyBiosourceQuals::m_Seh

protected

Definition at line 50 of file modify_bsrc_interface.hpp.

Referenced by CStrainSerotypeInfluenza::GetCommand(), TestCStrainSerotypeInfluenza_Parse(), x_ApplyToDescriptors(), x_ApplyToSeqAndFeat(), x_GetCommand(), CStrainSerotypeInfluenza::x_ParseDescriptors(), CStrainSerotypeInfluenza::x_ParseEntry(), and CStrainSerotypeInfluenza::x_ParseStrainSerotype().

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The documentation for this class was generated from the following files:

• include/gui/packages/pkg_sequence_edit/modify_bsrc_interface.hpp
• src/gui/packages/pkg_sequence_edit/modify_bsrc_interface.cpp