#include <objmgr/impl/tse_assigner.hpp>

Inheritance diagram for ITSE_Assigner:

Collaboration diagram for ITSE_Assigner:

Public Types
typedef CTSE_Chunk_Info::TPlace	TPlace

typedef CTSE_Chunk_Info::TSequence	TSequence

typedef CTSE_Chunk_Info::TAssembly	TAssembly

typedef CTSE_Chunk_Info::TChunkId	TChunkId

typedef CTSE_Chunk_Info::TLocationSet	TLocationSet

typedef CTSE_Chunk_Info::TDescInfo	TDescInfo

typedef CTSE_Chunk_Info::TBioseq_setId	TBioseq_setId

typedef CTSE_Chunk_Info::TAssemblyInfo	TAssemblyInfo

typedef CTSE_Chunk_Info::TBioseqId	TBioseqId

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
virtual	~ITSE_Assigner ()

virtual void	AddDescInfo (CTSE_Info &, const TDescInfo &info, TChunkId chunk_id)=0

virtual void	AddAnnotPlace (CTSE_Info &, const TPlace &place, TChunkId chunk_id)=0

virtual void	AddBioseqPlace (CTSE_Info &, TBioseq_setId place_id, TChunkId chunk_id)=0

virtual void	AddSeq_data (CTSE_Info &, const TLocationSet &location, CTSE_Chunk_Info &chunk)=0

virtual void	AddAssemblyInfo (CTSE_Info &, const TAssemblyInfo &info, TChunkId chunk_id)=0

virtual void	UpdateAnnotIndex (CTSE_Info &, CTSE_Chunk_Info &chunk)=0

virtual void	LoadDescr (CTSE_Info &, const TPlace &place, const CSeq_descr &descr)=0

virtual void	LoadAnnot (CTSE_Info &, const TPlace &place, CRef< CSeq_annot > annot, int chunk_id)=0

virtual void	LoadBioseq (CTSE_Info &, const TPlace &place, CRef< CSeq_entry > entry, int chunk_id)=0

virtual void	LoadChunkBioseqs (CTSE_Info &, const TPlace &place, const list< CRef< CBioseq > > &bioseqs, int chunk_id)=0

virtual void	LoadSequence (CTSE_Info &, const TPlace &place, TSeqPos pos, const TSequence &sequence)=0

virtual void	LoadAssembly (CTSE_Info &, const TBioseqId &seq_id, const TAssembly &assembly)=0

virtual void	LoadSeq_entry (CTSE_Info &, CSeq_entry &entry, CTSE_SetObjectInfo *set_info)=0

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static CBioseq_Base_Info &	x_GetBase (CTSE_Info &tse, const TPlace &place)

static CBioseq_Info &	x_GetBioseq (CTSE_Info &tse, const TPlace &place)

static CBioseq_set_Info &	x_GetBioseq_set (CTSE_Info &tse, const TPlace &place)

static CBioseq_Info &	x_GetBioseq (CTSE_Info &tse, const TBioseqId &id)

static CBioseq_set_Info &	x_GetBioseq_set (CTSE_Info &tse, TBioseq_setId id)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Additional Inherited Members
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...