NBestPlacement Class Reference

Search Toolkit Book for NBestPlacement

#include <algo/align/util/best_placement.hpp>

Public Types
using	score_fn_t = std::function< int(const objects::CSeq_align &)>

Public Member Functions
	NBestPlacement ()=delete
	~NBestPlacement ()=delete

Static Public Member Functions
static void	Rank (objects::CSeq_align_set &sas, score_fn_t score_fn=&NBestPlacement::GetScore)
	Adds the following scores: `best_placement_score` as computed by score_fn `rank` - all top scoring alignments will have rank=1 `rank1_index`, `rank1_count` if more than one top-scoring alignment. More...
static int	GetScore (const objects::CSeq_align &aln)

Detailed Description

Definition at line 40 of file best_placement.hpp.

Member Typedef Documentation

score_fn_t

using NBestPlacement::score_fn_t = std::function<int(const objects::CSeq_align&)>

Definition at line 46 of file best_placement.hpp.

Constructor & Destructor Documentation

NBestPlacement()

NBestPlacement::NBestPlacement ( )

delete

~NBestPlacement()

NBestPlacement::~NBestPlacement ( )

delete

Member Function Documentation

GetScore()

int NBestPlacement::GetScore ( const objects::CSeq_align &  aln )

static

Definition at line 600 of file best_placement.cpp.

Rank()

void NBestPlacement::Rank ( objects::CSeq_align_set &  sas, score_fn_t  score_fn = &NBestPlacement::GetScore  )

static

Adds the following scores: `best_placement_score` as computed by score_fn `rank` - all top scoring alignments will have rank=1 `rank1_index`, `rank1_count` if more than one top-scoring alignment.

Input seq-align-set shall contain alignments for the same query

Definition at line 608 of file best_placement.cpp.

References _ASSERT, a, b, CSeq_align_set_Base::Get(), and CSeq_align_set_Base::Set().

Referenced by CAdvancedAlignCleanup::BestPlacement().

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The documentation for this class was generated from the following files:

• include/algo/align/util/best_placement.hpp
• src/algo/align/util/best_placement.cpp