NSearchFeatPanel::CTrackFeatSubtype Class Reference

Search Toolkit Book for NSearchFeatPanel::CTrackFeatSubtype

#include <gui/widgets/seq_graphic/search_utils.hpp>

Collaboration diagram for NSearchFeatPanel::CTrackFeatSubtype:

Public Member Functions
	CTrackFeatSubtype ()
bool	ContainerBegin (const CTempTrackProxy *, const CTrackContainer *, bool) const
void	ContainerEnd (const CTempTrackProxy *, const CTrackContainer *, bool) const
bool	Track (const CTempTrackProxy *, const CLayoutTrack *t, bool visible)
bool	VarTrackExists ()
bool	SnpTrackExists ()
bool	NonAsnDataExists ()
const set< string > &	GetAnnotsVar ()
const set< string > &	GetAnnotsSnp ()
const set< string > &	GetAnnots ()
const set< objects::CSeqFeatData::ESubtype > &	GetSubtypes ()
unordered_map< string, set< objects::CSeqFeatData::ESubtype > >	GetNamedAnnotSubtypes ()
unordered_map< string, CConstIRef< INonAsnDataSource > >	GetNonAsnBlobs ()

Private Attributes
bool	m_var_track = false
bool	m_snp_track = false
set< string >	m_annots_var
set< string >	m_annots_snp
set< string >	m_annots
set< objects::CSeqFeatData::ESubtype >	m_subtypes
unordered_map< string, set< objects::CSeqFeatData::ESubtype > >	m_named_annot_subtypes
unordered_map< string, CConstIRef< INonAsnDataSource > >	m_NonAsnBlobs

Detailed Description

Definition at line 49 of file search_utils.hpp.

Constructor & Destructor Documentation

CTrackFeatSubtype()

NSearchFeatPanel::CTrackFeatSubtype::CTrackFeatSubtype ( )

inline

Definition at line 52 of file search_utils.hpp.

Member Function Documentation

ContainerBegin()

bool NSearchFeatPanel::CTrackFeatSubtype::ContainerBegin ( const CTempTrackProxy *  , const CTrackContainer *  , bool    ) const

inline

Definition at line 54 of file search_utils.hpp.

ContainerEnd()

void NSearchFeatPanel::CTrackFeatSubtype::ContainerEnd ( const CTempTrackProxy *  , const CTrackContainer *  , bool    ) const

inline

Definition at line 55 of file search_utils.hpp.

GetAnnots()

const set<string>& NSearchFeatPanel::CTrackFeatSubtype::GetAnnots ( void  )

inline

Definition at line 62 of file search_utils.hpp.

References m_annots.

Referenced by NSearchFeatPanel::GatherFeatures().

GetAnnotsSnp()

const set<string>& NSearchFeatPanel::CTrackFeatSubtype::GetAnnotsSnp ( )

inline

Definition at line 61 of file search_utils.hpp.

References m_annots_snp.

Referenced by NSearchFeatPanel::GatherFeatures(), and CFeaturePanel::GetAnnotNames().

GetAnnotsVar()

const set<string>& NSearchFeatPanel::CTrackFeatSubtype::GetAnnotsVar ( )

inline

Definition at line 60 of file search_utils.hpp.

References m_annots_var.

Referenced by NSearchFeatPanel::GatherFeatures().

GetNamedAnnotSubtypes()

unordered_map<string, set<objects::CSeqFeatData::ESubtype> > NSearchFeatPanel::CTrackFeatSubtype::GetNamedAnnotSubtypes ( )

inline

Definition at line 64 of file search_utils.hpp.

References m_named_annot_subtypes.

Referenced by NSearchFeatPanel::GatherFeatures().

GetNonAsnBlobs()

unordered_map<string, CConstIRef<INonAsnDataSource> > NSearchFeatPanel::CTrackFeatSubtype::GetNonAsnBlobs ( )

inline

Definition at line 66 of file search_utils.hpp.

References m_NonAsnBlobs.

Referenced by NSearchFeatPanel::GatherFeatures().

GetSubtypes()

const set<objects::CSeqFeatData::ESubtype>& NSearchFeatPanel::CTrackFeatSubtype::GetSubtypes ( )

inline

Definition at line 63 of file search_utils.hpp.

References m_subtypes.

Referenced by NSearchFeatPanel::GatherFeatures().

NonAsnDataExists()

bool NSearchFeatPanel::CTrackFeatSubtype::NonAsnDataExists ( )

inline

Definition at line 59 of file search_utils.hpp.

References m_NonAsnBlobs.

Referenced by NSearchFeatPanel::GatherFeatures().

SnpTrackExists()

bool NSearchFeatPanel::CTrackFeatSubtype::SnpTrackExists ( )

inline

Definition at line 58 of file search_utils.hpp.

References m_snp_track.

Referenced by NSearchFeatPanel::GatherFeatures().

Track()

bool NSearchFeatPanel::CTrackFeatSubtype::Track	(	const CTempTrackProxy *	,
		const CLayoutTrack *	t,
		bool	visible
	)

Definition at line 71 of file search_utils.cpp.

References set< Key, Compare >::begin(), CSeqUtils::eAnnot_Unnamed, set< Key, Compare >::end(), IFeatureTrackBase::GetAnnot(), CDataTrack::GetDataSource(), IFeatureTrackBase::GetFeatSubtypes(), CConstRef< C, Locker >::GetPointerOrNull(), INonAsnDataSource::HasNonAsnData(), set< Key, Compare >::insert(), IFeatureTrackBase::IsSnpTrack(), IFeatureTrackBase::IsVarTrack(), kEmptyStr, m_annots, m_annots_snp, m_annots_var, m_named_annot_subtypes, m_NonAsnBlobs, m_snp_track, m_subtypes, m_var_track, CSeqUtils::NameTypeStrToValue(), and t.

VarTrackExists()

bool NSearchFeatPanel::CTrackFeatSubtype::VarTrackExists ( )

inline

Definition at line 57 of file search_utils.hpp.

References m_var_track.

Referenced by NSearchFeatPanel::GatherFeatures().

Member Data Documentation

m_annots

set<string> NSearchFeatPanel::CTrackFeatSubtype::m_annots

private

Definition at line 70 of file search_utils.hpp.

Referenced by GetAnnots(), and Track().

m_annots_snp

set<string> NSearchFeatPanel::CTrackFeatSubtype::m_annots_snp

private

Definition at line 70 of file search_utils.hpp.

Referenced by GetAnnotsSnp(), and Track().

m_annots_var

set<string> NSearchFeatPanel::CTrackFeatSubtype::m_annots_var

private

Definition at line 70 of file search_utils.hpp.

Referenced by GetAnnotsVar(), and Track().

m_named_annot_subtypes

unordered_map<string, set<objects::CSeqFeatData::ESubtype> > NSearchFeatPanel::CTrackFeatSubtype::m_named_annot_subtypes

private

Definition at line 72 of file search_utils.hpp.

Referenced by GetNamedAnnotSubtypes(), and Track().

m_NonAsnBlobs

unordered_map<string, CConstIRef<INonAsnDataSource> > NSearchFeatPanel::CTrackFeatSubtype::m_NonAsnBlobs

private

Definition at line 73 of file search_utils.hpp.

Referenced by GetNonAsnBlobs(), NonAsnDataExists(), and Track().

m_snp_track

bool NSearchFeatPanel::CTrackFeatSubtype::m_snp_track = false

private

Definition at line 69 of file search_utils.hpp.

Referenced by SnpTrackExists(), and Track().

m_subtypes

set<objects::CSeqFeatData::ESubtype> NSearchFeatPanel::CTrackFeatSubtype::m_subtypes

private

Definition at line 71 of file search_utils.hpp.

Referenced by GetSubtypes(), and Track().

m_var_track

bool NSearchFeatPanel::CTrackFeatSubtype::m_var_track = false

private

Definition at line 68 of file search_utils.hpp.

Referenced by Track(), and VarTrackExists().

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The documentation for this class was generated from the following files:

• include/gui/widgets/seq_graphic/search_utils.hpp
• src/gui/widgets/seq_graphic/search_utils.cpp