#include "style_manager.hpp"
(Private to src/app/cn3d.)

Collaboration diagram for StyleManager:

Classes
class	UserAnnotation

Public Types
enum	eDisplayStyle { eSolidAtom , eTransparentAtom , eLineBond , eCylinderBond , eLineWormBond , eThickWormBond , eObjectWithArrow , eObjectWithoutArrow , eNotDisplayed }

typedef std::map< const MoleculeIdentifier *, std::vector< bool > >	ResidueMap

typedef std::list< ncbi::CRef< UserAnnotation > >	UserAnnotationList

Public Member Functions
	StyleManager (const StructureSet *set)

const Vector &	GetBackgroundColor (void) const

bool	GetAtomStyle (const Residue residue, const AtomPntr &atom, const AtomCoord coord, AtomStyle atomStyle, const StyleSettings::BackboneStyle saveBackboneStyle=NULL, const StyleSettings::GeneralStyle *saveGeneralStyle=NULL) const

bool	GetBondStyle (const Bond bond, const AtomPntr &atom1, const AtomCoord coord1, const AtomPntr &atom2, const AtomCoord coord2, double bondLength, BondStyle bondStyle) const

bool	GetHelixStyle (const StructureObject object, const Helix3D &helix, HelixStyle helixStyle) const

bool	GetStrandStyle (const StructureObject object, const Strand3D &strand, StrandStyle strandStyle) const

bool	EditGlobalStyle (wxWindow *parent)

bool	EditUserAnnotations (wxWindow *parent)

bool	CheckStyleSettings (StyleSettings *settings)

bool	CheckGlobalStyleSettings (void)

ncbi::objects::CCn3d_style_dictionary *	CreateASNStyleDictionary (void) const

bool	LoadFromASNStyleDictionary (const ncbi::objects::CCn3d_style_dictionary &styleDictionary)

bool	AddUserStyle (int id, StyleSettings *newStyle)

bool	RemoveUserStyle (int id)

const StyleSettings &	GetGlobalStyle (void) const

const StyleSettings &	GetStyleForResidue (const StructureObject *object, int moleculeID, int residueID) const

const Vector &	GetObjectColor (const Molecule *molecule) const

const StyleSettings *	GetUserStyle (int id) const

StyleSettings *	GetUserStyle (int id)

bool	MoleculeHasUserStyle (const StructureObject *object, int moleculeID) const

bool	ResidueHasUserStyle (const StructureObject *object, int moleculeID, int residueID) const

void	SetGlobalColorScheme (StyleSettings::ePredefinedColorScheme scheme)

void	SetGlobalRenderingStyle (StyleSettings::ePredefinedRenderingStyle style)

bool	SetGlobalStyle (const ncbi::objects::CCn3d_style_settings &styleASN)

bool	SaveToASNUserAnnotations (ncbi::objects::CCn3d_user_annotations *annotations) const

bool	LoadFromASNUserAnnotations (const ncbi::objects::CCn3d_user_annotations &annotations)

UserAnnotation *	AddUserAnnotation (void)

bool	RemoveUserAnnotation (UserAnnotation *annotation)

bool	DisplayUserAnnotation (UserAnnotation *annotation, bool display)

bool	MoveUserAnnotation (UserAnnotation *annotation, bool moveUp)

UserAnnotationList &	GetUserAnnotations (void)

const UserAnnotationList &	GetUserAnnotations (void) const

Private Types
typedef std::map< int, StyleSettings >	StyleMap

Private Member Functions
bool	GetObjectStyle (const StructureObject object, const Object3D &object3D, const StyleSettings::GeneralStyle &generalStyle, ObjectStyle objectStyle) const

Private Attributes
const StructureSet *	structureSet

StyleSettings	globalStyle

StyleMap	userStyles

UserAnnotationList	userAnnotations

Detailed Description

Definition at line 247 of file style_manager.hpp.

Member Typedef Documentation

◆ ResidueMap

typedef std::map< const MoleculeIdentifier * , std::vector < bool > > StyleManager::ResidueMap

Definition at line 334 of file style_manager.hpp.

◆ StyleMap

typedef std::map< int , StyleSettings > StyleManager::StyleMap

private

Definition at line 367 of file style_manager.hpp.

◆ UserAnnotationList

typedef std::list< ncbi::CRef < UserAnnotation > > StyleManager::UserAnnotationList

Definition at line 342 of file style_manager.hpp.

Member Enumeration Documentation

◆ eDisplayStyle

enum StyleManager::eDisplayStyle

Enumerator
eSolidAtom
eTransparentAtom
eLineBond
eCylinderBond
eLineWormBond
eThickWormBond
eObjectWithArrow
eObjectWithoutArrow
eNotDisplayed

Definition at line 253 of file style_manager.hpp.

Constructor & Destructor Documentation

◆ StyleManager()

StyleManager::StyleManager ( const StructureSet * set )

Definition at line 488 of file style_manager.cpp.

Member Function Documentation

◆ AddUserAnnotation()

StyleManager::UserAnnotation * StyleManager::AddUserAnnotation ( void )

Definition at line 1423 of file style_manager.cpp.

References StructureSet::eStyleData, StructureSet::SetDataChanged(), structureSet, and userAnnotations.

Referenced by LoadFromASNUserAnnotations(), and AnnotateDialog::NewAnnotation().

◆ AddUserStyle()

bool StyleManager::AddUserStyle	(	int *	id,
		StyleSettings **	newStyle
	)

Definition at line 1399 of file style_manager.cpp.

References StructureSet::eStyleData, i, max(), StructureSet::SetDataChanged(), structureSet, and userStyles.

Referenced by AnnotateDialog::NewAnnotation().

◆ CheckGlobalStyleSettings()

bool StyleManager::CheckGlobalStyleSettings ( void )

Definition at line 492 of file style_manager.cpp.

References CheckStyleSettings(), and globalStyle.

Referenced by StructureSet::Draw(), StructureSet::Load(), StructureWindow::OnSetStyle(), and SetGlobalStyle().

◆ CheckStyleSettings()

bool StyleManager::CheckStyleSettings ( StyleSettings * settings )

Definition at line 498 of file style_manager.cpp.

References StyleSettings::eComplete, StyleSettings::ePartial, StyleSettings::eTrace, StyleSettings::eTubeWorm, StyleSettings::eWireWorm, StructureSet::isAlphaOnly, StyleSettings::nucleotideBackbone, StyleSettings::proteinBackbone, structureSet, StyleSettings::BackboneStyle::style, and StyleSettings::BackboneStyle::type.

Referenced by CheckGlobalStyleSettings(), and StyleDialog::OnChange().

◆ CreateASNStyleDictionary()

CCn3d_style_dictionary * StyleManager::CreateASNStyleDictionary ( void ) const

Definition at line 1346 of file style_manager.cpp.

References globalStyle, i, NULL, StyleSettings::SaveSettingsToASN(), and userStyles.

Referenced by StructureSet::SaveASNData().

◆ DisplayUserAnnotation()

bool StyleManager::DisplayUserAnnotation	(	UserAnnotation *	annotation,
		bool	display
	)

Definition at line 1462 of file style_manager.cpp.

References a, StructureSet::eStyleData, GlobalMessenger(), StyleManager::UserAnnotation::isDisplayed, Messenger::PostRedrawAllSequenceViewers(), Messenger::PostRedrawAllStructures(), StructureSet::SetDataChanged(), structureSet, and userAnnotations.

Referenced by AnnotateDialog::NewAnnotation().

◆ EditGlobalStyle()

bool StyleManager::EditGlobalStyle ( wxWindow * parent )

Definition at line 1340 of file style_manager.cpp.

References globalStyle, and structureSet.

Referenced by StructureWindow::OnSetStyle().

◆ EditUserAnnotations()

bool StyleManager::EditUserAnnotations ( wxWindow * parent )

Definition at line 1392 of file style_manager.cpp.

References structureSet.

Referenced by StructureWindow::OnSetStyle().

◆ GetAtomStyle()

bool StyleManager::GetAtomStyle	(	const Residue *	residue,
		const AtomPntr &	atom,
		const AtomCoord *	coord,
		AtomStyle *	atomStyle,
		const StyleSettings::BackboneStyle **	saveBackboneStyle = `NULL`,
		const StyleSettings::GeneralStyle **	saveGeneralStyle = `NULL`
	)		const

Definition at line 580 of file style_manager.cpp.

References AtomPntr::aID, StructureSet::alignmentManager, AtomStyle::alpha, ATOM_NOT_DISPLAYED, AtomCoord::averageTemperature, StyleSettings::ballRadius, AtomStyle::centerLabel, Residue::code, Element::color, AtomStyle::color, color, StyleSettings::BackboneStyle::colorScheme, StyleSettings::GeneralStyle::colorScheme, StyleSettings::eAligned, Residue::eAlphaBackboneAtom, StyleSettings::eBallAndStick, StyleSettings::eBlockFit, StyleSettings::eBlockRowFit, StyleSettings::eBlockZFit, StyleSettings::eCharge, Colors::eCoil, StyleSettings::eComplete, Residue::eCompleteBackboneAtom, Colors::eCycle1, StyleSettings::eDomain, StyleSettings::eElement, StyleSettings::eFit, Colors::eHelix, StyleSettings::eHydrophobicity, Colors::eHydrophobicityMap, StyleSettings::eIdentity, StyleSettings::eInformationContent, BlockMultipleAlignment::eLeft, StyleSettings::eMolecule, Colors::eNegative, Colors::eNeutral, Colors::eNoDomain, Colors::eNoHydrophobicity, Colors::eNoTemperature, Colors::eNuc_A, Colors::eNuc_C, Colors::eNuc_G, Colors::eNuc_T_U, Colors::eNuc_X, StyleSettings::eObject, StyleSettings::eOff, StyleSettings::ePartial, Residue::ePartialBackboneAtom, Colors::ePositive, StyleSettings::eRainbow, Colors::eRainbowMap, StyleSettings::eResidue, ERRORMSG, StyleSettings::eSecondaryStructure, Residue::eSideChainAtom, eSolidAtom, StyleSettings::eSpaceFill, Colors::eStrand, StyleSettings::eTemperature, Colors::eTemperatureMap, StyleSettings::eTrace, eTransparentAtom, StyleSettings::eTubes, StyleSettings::eTubeWorm, Colors::eUnaligned, Residue::eUnknownAtom, StyleSettings::eUserSelect, StyleSettings::eVariety, StyleSettings::eWeightedVariety, StyleSettings::eWire, StyleSettings::eWireWorm, Colors::Get(), BlockMultipleAlignment::GetAlignmentIndex(), Residue::GetAtomInfo(), GetCharge(), AlignmentManager::GetCurrentMultipleAlignment(), PeriodicTableClass::GetElement(), GetHydrophobicity(), StructureBase::GetParentOfType(), BlockMultipleAlignment::GetRelativeAlignmentFraction(), BlockMultipleAlignment::GetRowForSequence(), GetStyleForResidue(), GlobalColors(), GlobalMessenger(), StyleSettings::heterogens, StyleSettings::hydrogensOn, Molecule::id, Residue::id, StructureObject::id, info, StyleSettings::ionLabelsOn, IsAligned(), AlignmentManager::IsAligned(), Residue::IsAminoAcid(), ShowHideManager::IsHidden(), Messenger::IsHighlighted(), AtomStyle::isHighlighted, IsMetal(), Residue::IsNucleotide(), StyleSettings::GeneralStyle::isOn, Molecule::IsResidueInHelix(), Molecule::IsResidueInStrand(), Molecule::IsSolvent(), AtomPntr::mID, StructureObject::minTemperature, AtomStyle::name, Residue::NAtomsInGraph(), Molecule::NO_DOMAIN_SET, AtomCoord::NO_TEMPERATURE, Molecule::NResidues(), StyleSettings::nucleotideBackbone, StyleSettings::nucleotideSidechains, NULL, AtomCoord::occupancy, StructureBase::parentSet, PeriodicTable, StyleSettings::proteinBackbone, StyleSettings::proteinSidechains, AtomStyle::radius, Molecule::residueDomains, AtomPntr::rID, Molecule::sequence, StructureSet::showHideManager, StyleSettings::solvents, StyleSettings::spaceFillProportion, StyleSettings::BackboneStyle::style, StyleSettings::GeneralStyle::style, AtomStyle::style, Element::symbol, toupper(), StyleSettings::tubeRadius, StyleSettings::BackboneStyle::type, UNKNOWN_HYDROPHOBICITY, StyleSettings::BackboneStyle::userColor, StyleSettings::GeneralStyle::userColor, and Element::vdWRadius.

Referenced by Residue::Draw(), GetBondStyle(), and Molecule::GetResidueColor().

◆ GetBackgroundColor()

const Vector& StyleManager::GetBackgroundColor ( void ) const

inline

Definition at line 265 of file style_manager.hpp.

References StyleSettings::backgroundColor, and globalStyle.

Referenced by OpenGLRenderer::Display().

◆ GetBondStyle()

bool StyleManager::GetBondStyle	(	const Bond *	bond,
		const AtomPntr &	atom1,
		const AtomCoord *	coord1,
		const AtomPntr &	atom2,
		const AtomCoord *	coord2,
		double	bondLength,
		BondStyle *	bondStyle
	)		const

Definition at line 923 of file style_manager.cpp.

References Bond::atom1, Bond::atom2, BondStyle::EndStyle::atomCap, BOND_NOT_DISPLAYED, Residue::AtomInfo::classification, Residue::AtomInfo::code, AtomStyle::color, BondStyle::EndStyle::color, StyleSettings::connections, Residue::eAlphaBackboneAtom, Residue::eCompleteBackboneAtom, eCylinderBond, Colors::eHighlight, eLineBond, eLineWormBond, BondStyle::end1, BondStyle::end2, eNotDisplayed, Residue::ePartialBackboneAtom, Bond::eRealDisulfide, ERRORMSG, Residue::eSideChainAtom, eThickWormBond, StyleSettings::eTrace, StyleSettings::eTubes, Bond::eVirtual, Bond::eVirtualDisulfide, StyleSettings::eWire, Colors::Get(), AtomSet::GetAtom(), ChemicalGraph::GetAtomInfo(), GetAtomStyle(), StructureBase::GetParentOfType(), GetStyleForResidue(), Residue::AtomInfo::glName, GlobalColors(), GlobalMessenger(), globalStyle, StructureObject::graph, Molecule::id, Residue::id, Residue::IsAminoAcid(), Messenger::IsHighlighted(), AtomStyle::isHighlighted, StyleSettings::GeneralStyle::isOn, AtomPntr::mID, BondStyle::midCap, BondStyle::EndStyle::name, Residue::nameGraph, Bond::nextVirtual, NULL, Bond::order, ShowHideManager::OverlayConfEnsembles(), StructureBase::parentSet, Bond::previousVirtual, AtomStyle::radius, BondStyle::EndStyle::radius, Residue::AtomInfo::residue, AtomPntr::rID, SetBondStyleFromResidueStyle(), StructureSet::showHideManager, StyleSettings::BackboneStyle::style, StyleSettings::GeneralStyle::style, AtomStyle::style, BondStyle::EndStyle::style, BondStyle::tension, StyleSettings::tubeRadius, StyleSettings::BackboneStyle::type, StyleSettings::GeneralStyle::userColor, StyleSettings::virtualDisulfideColor, and StyleSettings::virtualDisulfidesOn.

Referenced by Bond::Draw().

◆ GetGlobalStyle()

const StyleSettings& StyleManager::GetGlobalStyle ( void ) const

inline

Definition at line 303 of file style_manager.hpp.

References globalStyle.

Referenced by Molecule::DrawAllWithTerminiLabels(), BlockMultipleAlignment::GetCharacterTraitsAt(), AnnotateDialog::NewAnnotation(), and StructureWindow::OnEditFavorite().

◆ GetHelixStyle()

bool StyleManager::GetHelixStyle	(	const StructureObject *	object,
		const Helix3D &	helix,
		HelixStyle *	helixStyle
	)		const

◆ GetObjectColor()

const Vector & StyleManager::GetObjectColor ( const Molecule * molecule ) const

Definition at line 1332 of file style_manager.cpp.

References Colors::eCycle1, Colors::Get(), StructureBase::GetParentOfType(), GlobalColors(), and StructureObject::id.

Referenced by SequenceDisplay::GetRowTitle().

◆ GetObjectStyle()

bool StyleManager::GetObjectStyle	(	const StructureObject *	object,
		const Object3D &	object3D,
		const StyleSettings::GeneralStyle &	generalStyle,
		ObjectStyle *	objectStyle
	)		const