Search Toolkit Book for UpdateViewerWindow

#include "update_viewer_window.hpp"
(Private to src/app/cn3d.)

Inheritance diagram for UpdateViewerWindow:

Collaboration diagram for UpdateViewerWindow:

Public Member Functions
	UpdateViewerWindow (UpdateViewer *parentUpdateViewer)

	~UpdateViewerWindow (void)

void	EnableDerivedEditorMenuItems (bool enabled)

bool	SaveDialog (bool prompt, bool canCancel)

void	SetWindowTitle (void)

bool	DoDeleteAllBlocks (void) const

bool	DoThreadSingle (void) const

bool	DoBlastSingle (void) const

bool	DoBlastPSSMSingle (void) const

bool	DoBlastNeighborSingle (void) const

bool	DoBlockAlignSingle (void) const

bool	DoExtendSingle (void) const

bool	DoSetRegion (void) const

bool	DoMergeSingle (void) const

bool	DoMergeNeighbor (void) const

bool	DoDeleteSingle (void) const

void	CancelDerivedSpecialModesExcept (int id)

Public Member Functions inherited from ViewerWindowBase
void	NewDisplay (SequenceDisplay *display, bool enableSelectByColumn)

void	UpdateDisplay (SequenceDisplay *display)

void	ScrollToColumn (int column)

void	ScrollToRow (int row)

void	MakeCellVisible (int column, int row)

void	MakeSequenceVisible (const MoleculeIdentifier *identifier)

void	SetupFontFromRegistry (void)

virtual bool	RequestEditorEnable (bool enable)

bool	GeometryViolationsShown (void) const

void	UpdateGeometryViolations (void) const

void	OnTitleView (wxCommandEvent &event)

void	OnEditMenu (wxCommandEvent &event)

void	OnMouseMode (wxCommandEvent &event)

void	OnJustification (wxCommandEvent &event)

void	OnShowGeomVltns (wxCommandEvent &event)

void	OnFindPattern (wxCommandEvent &event)

void	OnCacheHighlights (wxCommandEvent &event)

BlockMultipleAlignment::eUnalignedJustification	GetCurrentJustification (void) const

void	RefreshWidget (void)

void	KillWindow (void)

bool	EditorIsOn (void) const

void	EnableUndo (bool enabled)

void	EnableRedo (bool enabled)

bool	DoSplitBlock (void) const

bool	DoMergeBlocks (void) const

bool	DoCreateBlock (void) const

bool	DoDeleteBlock (void) const

bool	SelectBlocksIsOn (void) const

void	SyncStructures (void)

bool	AlwaysSyncStructures (void) const

Private Types
enum	{ MID_DELETE_ALL_BLOCKS = START_VIEWER_WINDOW_DERIVED_MID , MID_DELETE_BLOCKS_ALL_ROWS , MID_SORT_UPDATES , MID_SORT_UPDATES_IDENTIFIER , MID_SORT_UPDATES_PSSM , MID_IMPORT_SEQUENCES , MID_IMPORT_STRUCTURE , MID_THREAD_ONE , MID_THREAD_ALL , MID_BLAST_ONE , MID_BLAST_PSSM_ONE , MID_BLAST_NEIGHBOR , MID_BLOCKALIGN_ONE , MID_BLOCKALIGN_ALL , MID_EXTEND_ONE , MID_EXTEND_ALL , MID_SET_REGION , MID_RESET_REGIONS , MID_MERGE_ONE , MID_MERGE_NEIGHBOR , MID_MERGE_ALL , MID_DELETE_ONE , MID_DELETE_ALL }

Private Member Functions
void	OnCloseWindow (wxCloseEvent &event)

void	OnSortUpdates (wxCommandEvent &event)

void	OnRunThreader (wxCommandEvent &event)

void	OnRunBlast (wxCommandEvent &event)

void	OnBlockAlign (wxCommandEvent &event)

void	OnExtend (wxCommandEvent &event)

void	OnSetRegion (wxCommandEvent &event)

void	OnMerge (wxCommandEvent &event)

void	OnDelete (wxCommandEvent &event)

void	OnImport (wxCommandEvent &event)

void	DeleteAllBlocksOff (void)

void	ThreadSingleOff (void)

void	BlastSingleOff (void)

void	BlastPSSMSingleOff (void)

void	BlastNeighborSingleOff (void)

void	BlockAlignSingleOff (void)

void	ExtendSingleOff (void)

void	SetRegionOff (void)

void	MergeSingleOff (void)

void	MergeNeighborOff (void)

void	DeleteSingleOff (void)

SequenceViewerWidget::eMouseMode	GetMouseModeForCreateAndMerge (void)

Private Attributes
UpdateViewer *	updateViewer

Friends
class	SequenceDisplay

Additional Inherited Members
Protected Types inherited from ViewerWindowBase
enum	{ MID_SHOW_TITLES , MID_HIDE_TITLES , MID_SHOW_GEOM_VLTNS , MID_FIND_PATTERN , MID_CACHE_HIGHLIGHTS , MID_RESTORE_CACHED_HIGHLIGHTS , MID_ENABLE_EDIT , MID_UNDO , MID_REDO , MID_SPLIT_BLOCK , MID_MERGE_BLOCKS , MID_CREATE_BLOCK , MID_DELETE_BLOCK , MID_SYNC_STRUCS , MID_SYNC_STRUCS_ON , MID_SELECT_RECT , MID_SELECT_COLS , MID_SELECT_ROWS , MID_SELECT_BLOCKS , MID_DRAG_HORIZ , MID_LEFT , MID_RIGHT , MID_CENTER , MID_SPLIT , START_VIEWER_WINDOW_DERIVED_MID }

Protected Member Functions inherited from ViewerWindowBase
	ViewerWindowBase (ViewerBase *parentViewer, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize)

virtual	~ViewerWindowBase (void)

void	EnableBaseEditorMenuItems (bool enabled)

void	SplitBlockOff (void)

void	MergeBlocksOff (void)

void	CreateBlockOff (void)

void	DeleteBlockOff (void)

void	CancelBaseSpecialModesExcept (int id)

void	CancelAllSpecialModesExcept (int id)

Protected Attributes inherited from ViewerWindowBase
SequenceViewerWidget *	viewerWidget

ViewerBase *	viewer

wxMenuBar *	menuBar

wxMenu *	viewMenu

wxMenu *	editMenu

wxMenu *	mouseModeMenu

wxMenu *	justificationMenu

SequenceViewerWidget::eMouseMode	prevMouseMode

BlockMultipleAlignment::eUnalignedJustification	currentJustification

Detailed Description

Definition at line 48 of file update_viewer_window.hpp.

Member Enumeration Documentation

◆ anonymous enum

anonymous enum

private

Enumerator
MID_DELETE_ALL_BLOCKS
MID_DELETE_BLOCKS_ALL_ROWS
MID_SORT_UPDATES
MID_SORT_UPDATES_IDENTIFIER
MID_SORT_UPDATES_PSSM
MID_IMPORT_SEQUENCES
MID_IMPORT_STRUCTURE
MID_THREAD_ONE
MID_THREAD_ALL
MID_BLAST_ONE
MID_BLAST_PSSM_ONE
MID_BLAST_NEIGHBOR
MID_BLOCKALIGN_ONE
MID_BLOCKALIGN_ALL
MID_EXTEND_ONE
MID_EXTEND_ALL
MID_SET_REGION
MID_RESET_REGIONS
MID_MERGE_ONE
MID_MERGE_NEIGHBOR
MID_MERGE_ALL
MID_DELETE_ONE
MID_DELETE_ALL

Definition at line 66 of file update_viewer_window.hpp.

Constructor & Destructor Documentation

◆ UpdateViewerWindow()

UpdateViewerWindow::UpdateViewerWindow ( UpdateViewer * parentUpdateViewer )

◆ ~UpdateViewerWindow()

UpdateViewerWindow::~UpdateViewerWindow ( void )

Definition at line 142 of file update_viewer_window.cpp.

Member Function Documentation

◆ BlastNeighborSingleOff()

void UpdateViewerWindow::BlastNeighborSingleOff ( void )

inlineprivate

Definition at line 123 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLAST_NEIGHBOR.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunBlast().

◆ BlastPSSMSingleOff()

void UpdateViewerWindow::BlastPSSMSingleOff ( void )

inlineprivate

Definition at line 118 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLAST_PSSM_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunBlast().

◆ BlastSingleOff()

void UpdateViewerWindow::BlastSingleOff ( void )

inlineprivate

Definition at line 113 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLAST_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunBlast().

◆ BlockAlignSingleOff()

void UpdateViewerWindow::BlockAlignSingleOff ( void )

inlineprivate

Definition at line 128 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLOCKALIGN_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnBlockAlign().

◆ CancelDerivedSpecialModesExcept()

void UpdateViewerWindow::CancelDerivedSpecialModesExcept ( int id )

inlinevirtual

◆ DeleteAllBlocksOff()

void UpdateViewerWindow::DeleteAllBlocksOff ( void )

inlineprivate

Definition at line 103 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_DELETE_ALL_BLOCKS.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnDelete().

◆ DeleteSingleOff()

void UpdateViewerWindow::DeleteSingleOff ( void )

inlineprivate

Definition at line 153 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_DELETE_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnDelete().

◆ DoBlastNeighborSingle()

bool UpdateViewerWindow::DoBlastNeighborSingle ( void ) const

inline

Definition at line 171 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLAST_NEIGHBOR.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunBlast().

◆ DoBlastPSSMSingle()

bool UpdateViewerWindow::DoBlastPSSMSingle ( void ) const

inline

Definition at line 170 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLAST_PSSM_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunBlast().

◆ DoBlastSingle()

bool UpdateViewerWindow::DoBlastSingle ( void ) const

inline

Definition at line 169 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLAST_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunBlast().

◆ DoBlockAlignSingle()

bool UpdateViewerWindow::DoBlockAlignSingle ( void ) const

inline

Definition at line 172 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_BLOCKALIGN_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnBlockAlign().

◆ DoDeleteAllBlocks()

bool UpdateViewerWindow::DoDeleteAllBlocks ( void ) const

inline

Definition at line 167 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_DELETE_ALL_BLOCKS.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnDelete().

◆ DoDeleteSingle()

bool UpdateViewerWindow::DoDeleteSingle ( void ) const

inline

Definition at line 177 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_DELETE_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnDelete().

◆ DoExtendSingle()

bool UpdateViewerWindow::DoExtendSingle ( void ) const

inline

Definition at line 173 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_EXTEND_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnExtend().

◆ DoMergeNeighbor()

bool UpdateViewerWindow::DoMergeNeighbor ( void ) const

inline

Definition at line 176 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_MERGE_NEIGHBOR.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnMerge().

◆ DoMergeSingle()

bool UpdateViewerWindow::DoMergeSingle ( void ) const

inline

Definition at line 175 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_MERGE_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnMerge().

◆ DoSetRegion()

bool UpdateViewerWindow::DoSetRegion ( void ) const

inline

Definition at line 174 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_SET_REGION.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnSetRegion().

◆ DoThreadSingle()

bool UpdateViewerWindow::DoThreadSingle ( void ) const

inline

Definition at line 168 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_THREAD_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunThreader().

◆ EnableDerivedEditorMenuItems()

void UpdateViewerWindow::EnableDerivedEditorMenuItems ( bool enabled )

virtual

Reimplemented from ViewerWindowBase.

Definition at line 166 of file update_viewer_window.cpp.

◆ ExtendSingleOff()

void UpdateViewerWindow::ExtendSingleOff ( void )

inlineprivate

Definition at line 133 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_EXTEND_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnExtend().

◆ GetMouseModeForCreateAndMerge()

SequenceViewerWidget::eMouseMode UpdateViewerWindow::GetMouseModeForCreateAndMerge ( void )

inlineprivatevirtual

Implements ViewerWindowBase.

Definition at line 159 of file update_viewer_window.hpp.

References SequenceViewerWidget::eSelectRectangle.

◆ MergeNeighborOff()

void UpdateViewerWindow::MergeNeighborOff ( void )

inlineprivate

Definition at line 148 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_MERGE_NEIGHBOR.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnMerge().

◆ MergeSingleOff()

void UpdateViewerWindow::MergeSingleOff ( void )

inlineprivate

Definition at line 143 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_MERGE_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnMerge().

◆ OnBlockAlign()

void UpdateViewerWindow::OnBlockAlign ( wxCommandEvent & event )

private

Definition at line 365 of file update_viewer_window.cpp.

References ViewerBase::alignmentManager, AlignmentManager::BlockAlignAllUpdates(), BlockAlignSingleOff(), ViewerWindowBase::CancelAllSpecialModesExcept(), DoBlockAlignSingle(), MID_BLOCKALIGN_ALL, MID_BLOCKALIGN_ONE, and updateViewer.

◆ OnCloseWindow()

void UpdateViewerWindow::OnCloseWindow ( wxCloseEvent & event )

private

Definition at line 146 of file update_viewer_window.cpp.

References GlobalMessenger(), ViewerBase::GUIDestroyed(), SaveDialog(), Messenger::UnPostRedrawSequenceViewer(), and ViewerWindowBase::viewer.

◆ OnDelete()

void UpdateViewerWindow::OnDelete ( wxCommandEvent & event )

private

Definition at line 239 of file update_viewer_window.cpp.

References ViewerWindowBase::CancelAllSpecialModesExcept(), BlockMultipleAlignment::Clone(), BlockMultipleAlignment::DeleteAllBlocks(), DeleteAllBlocksOff(), DeleteSingleOff(), DoDeleteAllBlocks(), DoDeleteSingle(), ctll::empty(), ViewerBase::GetCurrentAlignments(), MID_DELETE_ALL, MID_DELETE_ALL_BLOCKS, MID_DELETE_BLOCKS_ALL_ROWS, MID_DELETE_ONE, UpdateViewer::ReplaceAlignments(), and updateViewer.

◆ OnExtend()

void UpdateViewerWindow::OnExtend ( wxCommandEvent & event )

private

Definition at line 380 of file update_viewer_window.cpp.

References ViewerBase::alignmentManager, ViewerWindowBase::CancelAllSpecialModesExcept(), DoExtendSingle(), AlignmentManager::ExtendAllUpdates(), ExtendSingleOff(), MID_EXTEND_ALL, MID_EXTEND_ONE, and updateViewer.

◆ OnImport()

void UpdateViewerWindow::OnImport ( wxCommandEvent & event )

private

Definition at line 305 of file update_viewer_window.cpp.

References UpdateViewer::ImportSequences(), UpdateViewer::ImportStructure(), MID_IMPORT_SEQUENCES, MID_IMPORT_STRUCTURE, and updateViewer.

◆ OnMerge()

void UpdateViewerWindow::OnMerge ( wxCommandEvent & event )

private

Definition at line 208 of file update_viewer_window.cpp.

References ViewerBase::alignmentManager, all, ViewerWindowBase::CancelAllSpecialModesExcept(), DoMergeNeighbor(), DoMergeSingle(), ViewerBase::GetCurrentAlignments(), MergeNeighborOff(), MergeSingleOff(), AlignmentManager::MergeUpdates(), MID_MERGE_ALL, MID_MERGE_NEIGHBOR, MID_MERGE_ONE, and updateViewer.

◆ OnRunBlast()

void UpdateViewerWindow::OnRunBlast ( wxCommandEvent & event )

private

Definition at line 311 of file update_viewer_window.cpp.

References BlastNeighborSingleOff(), BlastPSSMSingleOff(), BlastSingleOff(), ViewerWindowBase::CancelAllSpecialModesExcept(), DoBlastNeighborSingle(), DoBlastPSSMSingle(), DoBlastSingle(), MID_BLAST_NEIGHBOR, MID_BLAST_ONE, and MID_BLAST_PSSM_ONE.

◆ OnRunThreader()

void UpdateViewerWindow::OnRunThreader ( wxCommandEvent & event )

private

Definition at line 170 of file update_viewer_window.cpp.

References ViewerBase::alignmentManager, ViewerWindowBase::CancelAllSpecialModesExcept(), DoThreadSingle(), ERRORMSG, Threader::EstimateNRandomStarts(), ViewerBase::GetCurrentAlignments(), AlignmentManager::GetCurrentMultipleAlignment(), ThreaderOptionsDialog::GetValues(), globalThreaderOptions, MID_THREAD_ALL, MID_THREAD_ONE, ThreaderOptions::nRandomStarts, RaiseLogWindow(), AlignmentManager::ThreadAllUpdates(), ThreadSingleOff(), and updateViewer.

◆ OnSetRegion()

void UpdateViewerWindow::OnSetRegion ( wxCommandEvent & event )

private

Definition at line 346 of file update_viewer_window.cpp.

References a, ViewerWindowBase::CancelAllSpecialModesExcept(), DoSetRegion(), ViewerBase::GetCurrentAlignments(), MID_RESET_REGIONS, MID_SET_REGION, SetRegionOff(), and updateViewer.

◆ OnSortUpdates()

void UpdateViewerWindow::OnSortUpdates ( wxCommandEvent & event )

private

Definition at line 338 of file update_viewer_window.cpp.

References MID_SORT_UPDATES_IDENTIFIER, MID_SORT_UPDATES_PSSM, UpdateViewer::SortByIdentifier(), UpdateViewer::SortByPSSM(), and updateViewer.

◆ SaveDialog()

bool UpdateViewerWindow::SaveDialog	(	bool	prompt,
		bool	canCancel
	)

virtual

Implements ViewerWindowBase.

Definition at line 278 of file update_viewer_window.cpp.

References ViewerBase::EnableStacks(), ViewerWindowBase::menuBar, ViewerWindowBase::MID_UNDO, NULL, option, ViewerBase::Revert(), UpdateViewer::SaveAlignments(), and updateViewer.

Referenced by OnCloseWindow(), and UpdateViewer::SaveDialog().

◆ SetRegionOff()

void UpdateViewerWindow::SetRegionOff ( void )

inlineprivate

Definition at line 138 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_SET_REGION.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnSetRegion().

◆ SetWindowTitle()

void UpdateViewerWindow::SetWindowTitle ( void )

virtual

Implements ViewerWindowBase.

Definition at line 161 of file update_viewer_window.cpp.

References GetWorkingTitle(), and SetTitle().

◆ ThreadSingleOff()

void UpdateViewerWindow::ThreadSingleOff ( void )

inlineprivate

Definition at line 108 of file update_viewer_window.hpp.

References ViewerWindowBase::menuBar, and MID_THREAD_ONE.

Referenced by CancelDerivedSpecialModesExcept(), SequenceDisplay::MouseDown(), and OnRunThreader().

Friends And Related Function Documentation

◆ SequenceDisplay

friend class SequenceDisplay

friend

Definition at line 50 of file update_viewer_window.hpp.

Member Data Documentation

◆ updateViewer

UpdateViewer* UpdateViewerWindow::updateViewer

private

Definition at line 63 of file update_viewer_window.hpp.

Referenced by SequenceDisplay::MouseDown(), OnBlockAlign(), OnDelete(), OnExtend(), OnImport(), OnMerge(), OnRunThreader(), OnSetRegion(), OnSortUpdates(), and SaveDialog().

The documentation for this class was generated from the following files:

src/app/cn3d/update_viewer_window.hpp
src/app/cn3d/update_viewer_window.cpp

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Friends

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ anonymous enum

Constructor & Destructor Documentation

◆ UpdateViewerWindow()

◆ ~UpdateViewerWindow()

Member Function Documentation

◆ BlastNeighborSingleOff()

◆ BlastPSSMSingleOff()

◆ BlastSingleOff()

◆ BlockAlignSingleOff()

◆ CancelDerivedSpecialModesExcept()

◆ DeleteAllBlocksOff()

◆ DeleteSingleOff()

◆ DoBlastNeighborSingle()

◆ DoBlastPSSMSingle()

◆ DoBlastSingle()

◆ DoBlockAlignSingle()

◆ DoDeleteAllBlocks()

◆ DoDeleteSingle()

◆ DoExtendSingle()

◆ DoMergeNeighbor()

◆ DoMergeSingle()

◆ DoSetRegion()

◆ DoThreadSingle()

◆ EnableDerivedEditorMenuItems()

◆ ExtendSingleOff()

◆ GetMouseModeForCreateAndMerge()

◆ MergeNeighborOff()

◆ MergeSingleOff()

◆ OnBlockAlign()

◆ OnCloseWindow()

◆ OnDelete()

◆ OnExtend()

◆ OnImport()

◆ OnMerge()

◆ OnRunBlast()

◆ OnRunThreader()

◆ OnSetRegion()

◆ OnSortUpdates()

◆ SaveDialog()

◆ SetRegionOff()

◆ SetWindowTitle()

◆ ThreadSingleOff()

Friends And Related Function Documentation

◆ SequenceDisplay

Member Data Documentation

◆ updateViewer