NCBI C++ ToolKit
Functions
cmd_add_seqentry.cpp File Reference
#include <ncbi_pch.hpp>
#include <objmgr/seq_entry_ci.hpp>
#include <objmgr/seq_annot_ci.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objmgr/util/sequence.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/seq/MolInfo.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objmgr/scope.hpp>
#include <objtools/readers/source_mod_parser.hpp>
#include <objtools/edit/cds_fix.hpp>
#include <gui/objutils/cmd_add_seqentry.hpp>
+ Include dependency graph for cmd_add_seqentry.cpp:

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Functions

 USING_SCOPE (objects)
 
bool SetMolinfoCompleteness (CMolInfo &mi, bool partial5, bool partial3)
 
void SetMolinfoForProtein (CRef< objects::CSeq_entry > protein, bool partial5, bool partial3)
 
CRef< objects::CSeq_feat > AddEmptyProteinFeatureToProtein (CRef< objects::CSeq_entry > protein, bool partial5, bool partial3)
 
CRef< objects::CSeq_feat > AddProteinFeatureToProtein (CRef< objects::CSeq_entry > protein, bool partial5, bool partial3)
 
CRef< objects::CSeq_entry > CreateTranslatedProteinSequence (CRef< objects::CSeq_feat > cds, objects::CBioseq_Handle nuc_h, bool create_general_only, int *offset)
 

Function Documentation

◆ AddEmptyProteinFeatureToProtein()

CRef<objects::CSeq_feat> AddEmptyProteinFeatureToProtein ( CRef< objects::CSeq_entry >  protein,
bool  partial5,
bool  partial3 
)

◆ AddProteinFeatureToProtein()

CRef<objects::CSeq_feat> AddProteinFeatureToProtein ( CRef< objects::CSeq_entry >  protein,
bool  partial5,
bool  partial3 
)

◆ CreateTranslatedProteinSequence()

CRef<objects::CSeq_entry> CreateTranslatedProteinSequence ( CRef< objects::CSeq_feat >  cds,
objects::CBioseq_Handle  nuc_h,
bool  create_general_only,
int offset 
)

◆ SetMolinfoCompleteness()

bool SetMolinfoCompleteness ( CMolInfo mi,
bool  partial5,
bool  partial3 
)

◆ SetMolinfoForProtein()

void SetMolinfoForProtein ( CRef< objects::CSeq_entry >  protein,
bool  partial5,
bool  partial3 
)

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Tue Feb 27 05:51:40 2024 by modify_doxy.py rev. 669887