NCBI C++ ToolKit
cmd_del_bioseq.hpp
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1 #ifndef GUI_OBJUTILS___CMD_DEL_BIOSEQ__HPP
2 #define GUI_OBJUTILS___CMD_DEL_BIOSEQ__HPP
3 
4 /* $Id: cmd_del_bioseq.hpp 33186 2015-06-11 12:19:16Z filippov $
5  * ===========================================================================
6  *
7  * PUBLIC DOMAIN NOTICE
8  * National Center for Biotechnology Information
9  *
10  * This software/database is a "United States Government Work" under the
11  * terms of the United States Copyright Act. It was written as part of
12  * the author's official duties as a United States Government employee and
13  * thus cannot be copyrighted. This software/database is freely available
14  * to the public for use. The National Library of Medicine and the U.S.
15  * Government have not placed any restriction on its use or reproduction.
16  *
17  * Although all reasonable efforts have been taken to ensure the accuracy
18  * and reliability of the software and data, the NLM and the U.S.
19  * Government do not and cannot warrant the performance or results that
20  * may be obtained by using this software or data. The NLM and the U.S.
21  * Government disclaim all warranties, express or implied, including
22  * warranties of performance, merchantability or fitness for any particular
23  * purpose.
24  *
25  * Please cite the author in any work or product based on this material.
26  *
27  * ===========================================================================
28  *
29  * Authors: Roman Katargin, Igor Filippov
30  *
31  * File Description:
32  *
33  */
34 
35 #include <corelib/ncbiobj.hpp>
36 #include <gui/gui_export.h>
37 
39 
41 #include <objmgr/bioseq_handle.hpp>
43 
45 BEGIN_objects_SCOPE
46 
48  public CObject, public IEditCommand
49 {
50 public:
51  CCmdDelBioseqInst(objects::CBioseq_Handle& bsh);
52 
53  /// @name IEditCommand interface implementation
54  /// @{
55  virtual void Execute();
56  virtual void Unexecute();
57  virtual string GetLabel();
58  /// @}
59 
60 protected:
62  objects::CBioseq_Handle m_BSH;
63  objects::CSeq_entry_Handle m_Set_SEH;
64  int m_index;
65 
66  // Keep track of setlevel annots/descrs that will be taken and re-attached
67  // to the seq during the renormalization of a nuc-prot set to a seq.
68  // Then during possible UNDO action, you can use these to take them back
69  // from the seq and re-attach them to the nuc-prot set.
70  vector<CSeq_annot_Handle> m_SetLevelAnnots;
71  vector< CConstRef<CSeqdesc> > m_SetLevelDescrs;
72 };
73 
74 
75 // Simply deletes the bioseq, nor renormalization of nuc-prot sets
77  public CObject, public IEditCommand
78 {
79 public:
80  CCmdDelBioseq(objects::CBioseq_Handle& bsh);
81 
82  /// @name IEditCommand interface implementation
83  /// @{
84  virtual void Execute();
85  virtual void Unexecute();
86  virtual string GetLabel();
87  /// @}
88 
89 protected:
91  objects::CBioseq_Handle m_BSH;
92  objects::CSeq_entry_Handle m_Set_SEH;
93  int m_index;
94 };
95 
96 END_objects_SCOPE
98 
99 #endif // GUI_OBJUTILS___CMD_DEL_BIOSEQ__HPP
objects::CBioseq_Handle m_BSH
vector< CSeq_annot_Handle > m_SetLevelAnnots
objects::CSeq_entry_Handle m_Set_SEH
vector< CConstRef< CSeqdesc > > m_SetLevelDescrs
CConstRef< objects::CBioseq > m_Inst
CConstRef< objects::CBioseq > m_Inst
objects::CBioseq_Handle m_BSH
objects::CSeq_entry_Handle m_Set_SEH
CObject –.
Definition: ncbiobj.hpp:180
Interface (functor) for object editing.
virtual void Unexecute()=0
Undo (opposite to Execute())
string GetLabel(const CSeq_id &id)
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define NCBI_GUIOBJUTILS_EXPORT
Definition: gui_export.h:512
Defines to provide correct exporting from DLLs in Windows.
string Execute(const string &cmmd, const vector< string > &args, const string &data=kEmptyStr)
Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.
Modified on Wed Apr 17 13:09:43 2024 by modify_doxy.py rev. 669887