NCBI C++ ToolKit
Functions | Variables
cobalt_test_util.cpp File Reference
#include <ncbi_pch.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/seq_vector.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objtools/data_loaders/blastdb/bdbloader.hpp>
#include <objtools/readers/fasta.hpp>
#include <serial/iterator.hpp>
#include <algo/cobalt/cobalt.hpp>
+ Include dependency graph for cobalt_test_util.cpp:

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Functions

 USING_SCOPE (cobalt)
 
 USING_SCOPE (objects)
 
int ReadFastaQueries (const string &filename, vector< CRef< objects::CSeq_loc > > &seqs, CRef< objects::CScope > &scope, bool parse_deflines, objects::CSeqIdGenerator *id_generator)
 
int ReadMsa (const string &filename, CRef< CSeq_align > &align, CRef< CScope > scope, bool parse_deflines, objects::CSeqIdGenerator *id_generator)
 

Variables

 USING_NCBI_SCOPE
 

Function Documentation

◆ ReadFastaQueries()

int ReadFastaQueries ( const string filename,
vector< CRef< objects::CSeq_loc > > &  seqs,
CRef< objects::CScope > &  scope,
bool  parse_deflines,
objects::CSeqIdGenerator *  id_generator 
)

◆ ReadMsa()

int ReadMsa ( const string filename,
CRef< CSeq_align > &  align,
CRef< CScope scope,
bool  parse_deflines,
objects::CSeqIdGenerator *  id_generator 
)

◆ USING_SCOPE() [1/2]

USING_SCOPE ( cobalt  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 46 of file cobalt_test_util.cpp.

Modified on Mon Mar 04 05:13:44 2024 by modify_doxy.py rev. 669887