conservation_colorer.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbistd.hpp>
#include <corelib/ncbi_limits.h>
#include <util/tables/raw_scoremat.h>
#include "remove_header_conflicts.hpp"
#include "block_multiple_alignment.hpp"
#include "conservation_colorer.hpp"
#include "cn3d_tools.hpp"
#include "cn3d_pssm.hpp"
#include <math.h>

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Functions
char	ScreenResidueCharacter (char ch)
int	GetBLOSUM62Score (char a, char b)

Variables
	USING_NCBI_SCOPE

Function Documentation

GetBLOSUM62Score()

int GetBLOSUM62Score	(	char	a,
		char	b
	)

Definition at line 58 of file conservation_colorer.cpp.

References a, b, int, NCBISM_Blosum62, NCBISM_Unpack(), SNCBIFullScoreMatrix::s, and ScreenResidueCharacter().

Referenced by ConservationColorer::CalculateBasicConservationColors().

ScreenResidueCharacter()

char ScreenResidueCharacter ( char  ch )

inline

Definition at line 53 of file conservation_colorer.cpp.

References LookupCharacterFromNCBIStdaaNumber(), LookupNCBIStdaaNumberFromCharacter(), and toupper().

Referenced by ConservationColorer::CalculateBasicConservationColors(), ConservationColorer::CalculateFitConservationColors(), GetBLOSUM62Score(), and ConservationColorer::GetProfileIndexAndResidue().

Variable Documentation

USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 48 of file conservation_colorer.cpp.