NCBI C++ ToolKit
contig_item.hpp
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1 #ifndef OBJTOOLS_FORMAT_ITEMS___CONTIG_ITEM__HPP
2 #define OBJTOOLS_FORMAT_ITEMS___CONTIG_ITEM__HPP
3 
4 /* $Id: contig_item.hpp 99549 2023-04-17 14:20:00Z gotvyans $
5 * ===========================================================================
6 *
7 * PUBLIC DOMAIN NOTICE
8 * National Center for Biotechnology Information
9 *
10 * This software/database is a "United States Government Work" under the
11 * terms of the United States Copyright Act. It was written as part of
12 * the author's official duties as a United States Government employee and
13 * thus cannot be copyrighted. This software/database is freely available
14 * to the public for use. The National Library of Medicine and the U.S.
15 * Government have not placed any restriction on its use or reproduction.
16 *
17 * Although all reasonable efforts have been taken to ensure the accuracy
18 * and reliability of the software and data, the NLM and the U.S.
19 * Government do not and cannot warrant the performance or results that
20 * may be obtained by using this software or data. The NLM and the U.S.
21 * Government disclaim all warranties, express or implied, including
22 * warranties of performance, merchantability or fitness for any particular
23 * purpose.
24 *
25 * Please cite the author in any work or product based on this material.
26 *
27 * ===========================================================================
28 *
29 * Author: Aaron Ucko, NCBI
30 * Mati Shomrat
31 *
32 * File Description:
33 * Contig item for flat-file generator
34 *
35 */
36 #include <corelib/ncbistd.hpp>
37 
39 
41 
42 
45 
46 
47 class CBioseqContext;
48 class IFormatter;
49 
50 
51 ///////////////////////////////////////////////////////////////////////////
52 //
53 // CONTIG
54 
56 {
57 public:
59  void Format(IFormatter& formatter, IFlatTextOStream& text_os) const override;
60 
61  const CSeq_loc& GetLoc(void) const { return *m_Loc; }
62 
63  EItem GetItemType() const override;
64 private:
65  void x_GatherInfo(CBioseqContext& ctx) override;
66  // data
68 };
69 
70 
73 
74 #endif /* OBJTOOLS_FORMAT_ITEMS___CONTIG_ITEM__HPP */
const CSeq_loc & GetLoc(void) const
Definition: contig_item.hpp:61
CRef< CSeq_loc > m_Loc
Definition: contig_item.hpp:67
virtual void Format(IFormatter &formatter, IFlatTextOStream &text_os) const =0
virtual void x_GatherInfo(CBioseqContext &)
Definition: item_base.hpp:71
virtual EItem GetItemType(void) const =0
Include a standard set of the NCBI C++ Toolkit most basic headers.
CS_CONTEXT * ctx
Definition: t0006.c:12
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define END_SCOPE(ns)
End the previously defined scope.
Definition: ncbistl.hpp:75
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define BEGIN_SCOPE(ns)
Define a new scope.
Definition: ncbistl.hpp:72
#define NCBI_FORMAT_EXPORT
Definition: ncbi_export.h:496
Modified on Mon May 20 05:01:48 2024 by modify_doxy.py rev. 669887