#include <ncbi_pch.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seqfeat/RNA_ref.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <gui/packages/pkg_sequence_edit/miscedit_util.hpp>
#include <gui/objutils/cmd_change_seq_feat.hpp>
#include <gui/objutils/cmd_del_seq_feat.hpp>
#include <objmgr/util/sequence.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/widgets/edit/generic_report_dlg.hpp>
#include <objtools/edit/text_object_description.hpp>
#include <objtools/format/flat_file_config.hpp>
#include <objtools/format/flat_file_generator.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <objmgr/seq_map.hpp>
#include <objmgr/seq_map_ci.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objtools/validator/utilities.hpp>
#include <gui/packages/pkg_sequence_edit/split_cds_with_too_many_n.hpp>
#include <gui/packages/pkg_sequence_edit/convert_cds_with_gaps_to_misc_feat.hpp>
#include <wx/stattext.h>
#include <wx/msgdlg.h>

Include dependency graph for convert_cds_with_gaps_to_misc_feat.cpp:

Go to the SVN repository for this file.

Typedefs
typedef pair< size_t, bool >	TRNALength

typedef map< const char *, TRNALength >	TRNALengthMap

Functions
	USING_SCOPE (objects)

Variables
static const TRNALengthMap	kTrnaLengthMap

Typedef Documentation

◆ TRNALength

typedef pair<size_t, bool> TRNALength

Definition at line 520 of file convert_cds_with_gaps_to_misc_feat.cpp.

◆ TRNALengthMap

typedef map<const char*, TRNALength > TRNALengthMap

Definition at line 521 of file convert_cds_with_gaps_to_misc_feat.cpp.

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ kTrnaLengthMap

const TRNALengthMap kTrnaLengthMap

static

Initial value:

{
    { "16S", { 1000, false } },
    { "18S", { 1000, false } },
    { "23S", { 2000, false } },
    { "25S", { 1000, false } },
    { "26S", { 1000, false } },
    { "28S", { 1000, false } },
    { "28S", { 3300, false } },
    { "small", { 1000, false } },
    { "large", { 1000, false } },
    { "5.8S", { 130, true } },
    { "5S", { 90, true } }
}

Definition at line 523 of file convert_cds_with_gaps_to_misc_feat.cpp.

Referenced by CConvertBadCdsAndRnaToMiscFeat::getCdsOverlap(), CConvertBadCdsAndRnaToMiscFeat::getRnaOverlap(), and CConvertBadCdsAndRnaToMiscFeat::IsShortrRNA().

Typedefs

Functions