cpg_search_tool.cpp File Reference

#include <ncbi_pch.hpp>
#include <gui/core/data_mining_service.hpp>
#include "cpg_search_tool.hpp"
#include <algo/sequence/cpg.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbifile.hpp>
#include <corelib/ncbireg.hpp>
#include <gui/widgets/wx/message_box.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <objects/seqfeat/Cdregion.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <gui/objutils/label.hpp>
#include <gui/objutils/utils.hpp>
#include <gui/widgets/wx/ui_tool_registry.hpp>
#include <gui/utils/app_job_dispatcher.hpp>
#include <gui/utils/extension_impl.hpp>
#include <objmgr/util/sequence.hpp>
#include <objects/seqfeat/Genetic_code.hpp>
#include <objects/seqfeat/Genetic_code_table.hpp>
#include <algo/sequence/orf.hpp>
#include <wx/sizer.h>
#include <wx/stattext.h>
#include <wx/choice.h>
#include <wx/srchctrl.h>

Include dependency graph for cpg_search_tool.cpp:

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Macros
#define	ID_COMBOBOX   10003
#define	ID_TEXT   11414
#define	ID_COMBOBOX_UPDATE   10111

Functions
	USING_SCOPE (objects)

Variables
static const char *	kCpgSizeOfSlidingWindow = "CpgSizeOfSlidingWindow"
static const char *	kCpgMinLenOfIsland = "CpgMinLenOfIsland"
static const char *	kCpgMinGC = "CpgMInGC"
static const char *	kCpgMinPercentage = "CpgMinPercentage"
static const char *	kCpgAdjMergeTHreshold = "CpgAdjMergeThreshold"

Macro Definition Documentation

ID_COMBOBOX

#define ID_COMBOBOX   10003

Definition at line 71 of file cpg_search_tool.cpp.

ID_COMBOBOX_UPDATE

#define ID_COMBOBOX_UPDATE   10111

Definition at line 73 of file cpg_search_tool.cpp.

ID_TEXT

#define ID_TEXT   11414

Definition at line 72 of file cpg_search_tool.cpp.

Function Documentation

USING_SCOPE()

USING_SCOPE

(

objects

)

Variable Documentation

kCpgAdjMergeTHreshold

const char* kCpgAdjMergeTHreshold = "CpgAdjMergeThreshold"

static

Definition at line 82 of file cpg_search_tool.cpp.

Referenced by CCpgSearchForm::x_LoadSettings(), and CCpgSearchForm::x_SaveSettings().

kCpgMinGC

const char* kCpgMinGC = "CpgMInGC"

static

Definition at line 80 of file cpg_search_tool.cpp.

Referenced by CCpgSearchForm::x_LoadSettings(), and CCpgSearchForm::x_SaveSettings().

kCpgMinLenOfIsland

const char* kCpgMinLenOfIsland = "CpgMinLenOfIsland"

static

Definition at line 79 of file cpg_search_tool.cpp.

Referenced by CCpgSearchForm::x_LoadSettings(), and CCpgSearchForm::x_SaveSettings().

kCpgMinPercentage

const char* kCpgMinPercentage = "CpgMinPercentage"

static

Definition at line 81 of file cpg_search_tool.cpp.

Referenced by CCpgSearchForm::x_LoadSettings(), and CCpgSearchForm::x_SaveSettings().

kCpgSizeOfSlidingWindow

const char* kCpgSizeOfSlidingWindow = "CpgSizeOfSlidingWindow"

static

Definition at line 78 of file cpg_search_tool.cpp.

Referenced by CCpgSearchForm::x_LoadSettings(), and CCpgSearchForm::x_SaveSettings().