NCBI C++ ToolKit
Classes | Functions | Variables
cpgdemo.cpp File Reference
#include <ncbi_pch.hpp>
#include <algo/sequence/cpg.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbienv.hpp>
#include <objmgr/object_manager.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_vector.hpp>
+ Include dependency graph for cpgdemo.cpp:

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Classes

class  CCpGDemoApp
 

Functions

 USING_SCOPE (objects)
 
CNcbiOstreamoperator<< (CNcbiOstream &o, SCpGIsland i)
 
int ScanForCpGs (const string &acc, CScope &scope, const CArgs &args)
 
int ScanForCpGs (istream &infile, const CArgs &args)
 
int main (int argc, char **argv)
 

Variables

 USING_NCBI_SCOPE
 

Function Documentation

◆ main()

int main ( int  argc,
char **  argv 
)

Definition at line 247 of file cpgdemo.cpp.

References CNcbiApplicationAPI::AppMain(), eDS_Default, and NULL.

◆ operator<<()

CNcbiOstream& operator<< ( CNcbiOstream o,
SCpGIsland  i 
)

Definition at line 95 of file cpgdemo.cpp.

References i, and len.

◆ ScanForCpGs() [1/2]

int ScanForCpGs ( const string acc,
CScope scope,
const CArgs args 
)

◆ ScanForCpGs() [2/2]

int ScanForCpGs ( istream &  infile,
const CArgs args 
)

◆ USING_SCOPE()

USING_SCOPE ( objects  )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 45 of file cpgdemo.cpp.

Modified on Sun Mar 03 03:16:04 2024 by modify_doxy.py rev. 669887