NCBI C++ ToolKit
Functions
cuPssmMaker.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbistr.hpp>
#include <algo/blast/api/psiblast_options.hpp>
#include <algo/blast/api/pssm_engine.hpp>
#include <algo/structure/cd_utils/cuSequence.hpp>
#include <algo/structure/cd_utils/cuPssmMaker.hpp>
#include <algo/structure/cd_utils/cuPssmScorer.hpp>
#include <algo/structure/cd_utils/cuScoringMatrix.hpp>
#include <objects/scoremat/PssmFinalData.hpp>
#include <objects/scoremat/PssmIntermediateData.hpp>
#include <objects/cdd/Cdd_id.hpp>
+ Include dependency graph for cuPssmMaker.cpp:

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Functions

static void printMsa (const char *filename, const PSIMsa *msa, vector< string > &seqIds)
 
int findHighestScoringRowByPssm (CCdCore *ccd)
 

Function Documentation

◆ findHighestScoringRowByPssm()

int findHighestScoringRowByPssm ( CCdCore ccd)

◆ printMsa()

static void printMsa ( const char *  filename,
const PSIMsa msa,
vector< string > &  seqIds 
)
static
Modified on Mon Feb 26 04:00:22 2024 by modify_doxy.py rev. 669887