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SNCBIFullScoreMatrix m_scoreMatrix
void initialize(EScoreMatrixType type)
ScoreMatrix(EScoreMatrixType type)
string GetScoringMatrixName(EScoreMatrixType type)
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define END_SCOPE(ns)
End the previously defined scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
#define BEGIN_SCOPE(ns)
Define a new scope.
const SNCBIPackedScoreMatrix NCBISM_Pam30
const SNCBIPackedScoreMatrix NCBISM_Blosum62
const SNCBIPackedScoreMatrix NCBISM_Pam250
const SNCBIPackedScoreMatrix NCBISM_Blosum80
void NCBISM_Unpack(const SNCBIPackedScoreMatrix *psm, SNCBIFullScoreMatrix *fsm)
Expand a packed score matrix into an unpacked one, which callers can proceed to index directly by sta...
const SNCBIPackedScoreMatrix NCBISM_Pam70
const SNCBIPackedScoreMatrix NCBISM_Blosum45
The standard matrices.
const char * symbols
order of residues