NCBI C++ ToolKit
Classes | Functions | Variables
deltablast_app.cpp File Reference

DELTA-BLAST command line application. More...

#include <ncbi_pch.hpp>
#include <corelib/ncbistl.hpp>
#include <corelib/ncbiapp.hpp>
#include <algo/blast/api/deltablast.hpp>
#include <algo/blast/api/psiblast.hpp>
#include <algo/blast/api/remote_blast.hpp>
#include <algo/blast/api/blast_results.hpp>
#include <algo/blast/blastinput/blast_fasta_input.hpp>
#include <algo/blast/blastinput/deltablast_args.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/api/query_data.hpp>
#include <algo/blast/format/blast_format.hpp>
#include <objects/scoremat/Pssm.hpp>
#include <objects/scoremat/PssmIntermediateData.hpp>
#include <objects/seq/Seq_descr.hpp>
#include "blast_app_util.hpp"
+ Include dependency graph for deltablast_app.cpp:

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Classes

class  CDeltaBlastApp
 

Functions

 USING_SCOPE (objects)
 
 USING_SCOPE (blast)
 
static void s_AddSeqTitleToPssm (CRef< CPssmWithParameters > pssm, CRef< CBlastQueryVector > query_batch, CRef< CScope > scope)
 
static void s_AddSeqDataToPssm (CRef< CPssmWithParameters > pssm, CRef< CBlastQueryVector > query_batch, CRef< CScope > scope)
 
int main (int argc, const char *argv[])
 

Variables

 USING_NCBI_SCOPE
 

Detailed Description

DELTA-BLAST command line application.

Definition in file deltablast_app.cpp.

Function Documentation

◆ main()

int main ( int  argc,
const char *  argv[] 
)

Definition at line 599 of file deltablast_app.cpp.

References CNcbiApplicationAPI::AppMain().

◆ s_AddSeqDataToPssm()

static void s_AddSeqDataToPssm ( CRef< CPssmWithParameters pssm,
CRef< CBlastQueryVector query_batch,
CRef< CScope scope 
)
static

◆ s_AddSeqTitleToPssm()

static void s_AddSeqTitleToPssm ( CRef< CPssmWithParameters pssm,
CRef< CBlastQueryVector query_batch,
CRef< CScope scope 
)
static

◆ USING_SCOPE() [1/2]

USING_SCOPE ( blast  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 53 of file deltablast_app.cpp.

Modified on Fri Jan 05 07:24:26 2024 by modify_doxy.py rev. 669887