NCBI C++ ToolKit

algo → objects Relation

File in include/algoIncludes file in include/objects
align / advanced_cleanup / advanced_cleanup.hppseqalign / Seq_align.hpp
align / advanced_cleanup / advanced_cleanup.hppseqalign / Seq_align_set.hpp
blast / api / blast_aux.hppseqalign / Seq_align_set.hpp
blast / api / blast_aux.hppseqloc / Seq_id.hpp
blast / api / blast_aux.hppseqloc / Seq_interval.hpp
blast / api / blast_aux.hppseq / seqlocinfo.hpp
blast / api / blast_aux.hppblast / Blast4_error.hpp
blast / api / blast_options.hppscoremat / PssmWithParameters.hpp
blast / api / blast_options_builder.hppblast / Blast4_parameter.hpp
blast / api / blast_options_builder.hppblast / Blast4_parameters.hpp
blast / api / blast_types.hppseqalign / Seq_align_set.hpp
blast / api / cdd_pssm_input.hppseqloc / Seq_id.hpp
blast / api / deltablast.hppscoremat / PssmWithParameters.hpp
blast / api / msa_pssm_input.hppseqset / Seq_entry.hpp
blast / api / objmgrfree_query_data.hppseq / Bioseq.hpp
blast / api / prelim_stage.hppscoremat / PssmWithParameters.hpp
blast / api / prelim_stage.hppseqalign / Std_seg.hpp
blast / api / psiblast_iteration.hppseq / seq_id_handle.hpp
blast / api / pssm_input.hppseq / Bioseq.hpp
blast / api / query_data.hppseqloc / Seq_loc.hpp
blast / api / query_data.hppseqset / Bioseq_set.hpp
blast / api / remote_blast.hppblast / blast__.hpp
blast / api / remote_blast.hppblast / names.hpp
blast / api / search_strategy.hppblast / blast__.hpp
blast / api / sseqloc.hppseqloc / Seq_loc.hpp
blast / api / traceback_stage.hppscoremat / PssmWithParameters.hpp
blast / blastinput / blast_args.hppseqloc / Na_strand.hpp
blast / blastinput / blast_args.hppscoremat / PssmWithParameters.hpp
blast / blastinput / blast_input_aux.hppseqset / Bioseq_set.hpp
structure / cd_utils / cuBookRefUtils.hppcdd / Cdd_book_ref.hpp
structure / cd_utils / cuCD.hppncbimime / Ncbi_mime_asn1.hpp
structure / cd_utils / cuCdUpdater.hppblastdb / Blast_def_line_set.hpp
structure / cd_utils / cuCdUpdater.hppgeneral / User_field.hpp
structure / cd_utils / cuCdUpdater.hppseqalign / Seq_align_set.hpp
structure / cd_utils / cuCdUpdater.hppentrez2 / entrez2_client.hpp
structure / cd_utils / cuConsensusMaker.hppseqalign / Seq_align_set.hpp
structure / cd_utils / cuCppNCBI.hppcdd / cdd__.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Cdd.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Cdd_id.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Cdd_descr.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Cdd_descr_set.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Cdd_id_set.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Update_align.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Update_comment.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Global_id.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Align_annot.hpp
structure / cd_utils / cuCppNCBI.hppcdd / Align_annot_set.hpp
structure / cd_utils / cuCppNCBI.hppgeneral / Dbtag.hpp
structure / cd_utils / cuCppNCBI.hppgeneral / Object_id.hpp
structure / cd_utils / cuCppNCBI.hppgeneral / Date.hpp
structure / cd_utils / cuCppNCBI.hppseq / seq__.hpp
structure / cd_utils / cuCppNCBI.hppseq / Seq_inst.hpp
structure / cd_utils / cuCppNCBI.hppseq / Bioseq.hpp
structure / cd_utils / cuCppNCBI.hppseq / Seq_annot.hpp
structure / cd_utils / cuCppNCBI.hppseq / Seq_descr.hpp
structure / cd_utils / cuCppNCBI.hppseq / Seqdesc.hpp
structure / cd_utils / cuCppNCBI.hppseq / NCBIeaa.hpp
structure / cd_utils / cuCppNCBI.hppseq / IUPACaa.hpp
structure / cd_utils / cuCppNCBI.hppseq / NCBIstdaa.hpp
structure / cd_utils / cuCppNCBI.hppseqalign / Dense_diag.hpp
structure / cd_utils / cuCppNCBI.hppseqalign / Seq_align.hpp
structure / cd_utils / cuCppNCBI.hppseqloc / Seq_loc.hpp
structure / cd_utils / cuCppNCBI.hppseqloc / Seq_id.hpp
structure / cd_utils / cuCppNCBI.hppseqloc / PDB_seq_id.hpp
structure / cd_utils / cuCppNCBI.hppseqloc / PDB_mol_id.hpp
structure / cd_utils / cuCppNCBI.hppseqloc / Seq_interval.hpp
structure / cd_utils / cuCppNCBI.hppseqset / Seq_entry.hpp
structure / cd_utils / cuCppNCBI.hppseqset / Bioseq_set.hpp
structure / cd_utils / cuCppNCBI.hppseqfeat / BioSource.hpp
structure / cd_utils / cuCppNCBI.hppseqfeat / Org_ref.hpp
structure / cd_utils / cuCppNCBI.hppseqblock / PDB_block.hpp
structure / cd_utils / cuCppNCBI.hppmmdb1 / Biostruc.hpp
structure / cd_utils / cuCppNCBI.hppmmdb1 / Biostruc_id.hpp
structure / cd_utils / cuCppNCBI.hppmmdb1 / Biostruc_descr.hpp
structure / cd_utils / cuCppNCBI.hppmmdb1 / Biostruc_annot_set.hpp
structure / cd_utils / cuCppNCBI.hppmmdb1 / Mmdb_id.hpp
structure / cd_utils / cuCppNCBI.hppmmdb3 / Biostruc_feature_set.hpp
structure / cd_utils / cuCppNCBI.hppmmdb3 / Biostruc_feature.hpp
structure / cd_utils / cuCppNCBI.hppmmdb3 / Chem_graph_alignment.hpp
structure / cd_utils / cuGlobalDefs.hppseqalign / Seq_align.hpp
structure / cd_utils / cuHitsDistributor.hppseqalign / Seq_align_set.hpp
structure / cd_utils / cuPrefTaxNodes.hppcdd / Cdd_pref_nodes.hpp
structure / cd_utils / cuPrefTaxNodes.hppcdd / Cdd_org_ref.hpp
structure / cd_utils / cuPssmMaker.hppscoremat / Pssm.hpp
structure / cd_utils / cuPssmMaker.hppscoremat / PssmWithParameters.hpp
structure / cd_utils / cuPssmScorer.hppscoremat / PssmWithParameters.hpp
structure / cd_utils / cuPssmScorer.hppseqalign / Seq_align.hpp
structure / cd_utils / cuPssmScorer.hppseq / Bioseq.hpp
structure / cd_utils / cuSeqAnnotFromFasta.hppseq / Seq_annot.hpp
structure / cd_utils / cuSeqAnnotFromFasta.hppseq / Bioseq.hpp
structure / cd_utils / cuSeqTreeFactory.hppcdd / Sequence_tree.hpp
structure / cd_utils / cuSeqTreeNj.hppseqloc / PDB_seq_id.hpp
structure / cd_utils / cuSeqTreeNj.hppseqloc / PDB_mol_id.hpp
structure / cd_utils / cuSeqTreeSlc.hppseqloc / PDB_seq_id.hpp
structure / cd_utils / cuSeqTreeSlc.hppseqloc / PDB_mol_id.hpp
structure / cd_utils / cuSequence.hppseq / Bioseq.hpp
structure / cd_utils / cuSequence.hppseqloc / Seq_id.hpp
structure / cd_utils / cuSequence.hppseqset / Seq_entry.hpp
structure / cd_utils / cuSequence.hppseqblock / PDB_block.hpp
structure / cd_utils / cuTaxClient.hpptaxon1 / taxon1.hpp
structure / cd_utils / cuTaxClient.hpptaxon1 / Taxon2_data.hpp
cobalt / cobalt.hppseqalign / Seq_align.hpp
cobalt / cobalt.hppseqloc / Seq_loc.hpp
cobalt / cobalt.hppbiotree / BioTreeContainer.hpp
cobalt / cobalt.hppblast / Blast4_archive.hpp
cobalt / hit.hppseqalign / Dense_seg.hpp
cobalt / hit.hppseqalign / Dense_diag.hpp
cobalt / kmercounts.hppseqloc / Seq_loc.hpp
cobalt / options.hppblast / Blast4_archive.hpp
cobalt / seq.hppseqalign / Seq_align.hpp
cobalt / traceback.hppseqalign / Dense_seg.hpp
cobalt / traceback.hppseqalign / Dense_diag.hpp
align / contig_assembly / contig_assembly.hppseqloc / Seq_id.hpp
align / contig_assembly / contig_assembly.hppseqloc / Na_strand_.hpp
blast / dbindex / sequence_istream.hppseqset / Seq_entry.hpp
blast / dbindex / sequence_istream.hppseqloc / Seq_loc.hpp
dustmask / symdust.hppseqloc / Seq_loc.hpp
dustmask / symdust.hppseqloc / Packed_seqint.hpp
blast / format / blast_format.hppblast / blast__.hpp
blast / format / blastfmtutil.hppseqalign / Dense_seg.hpp
blast / format / blastxml2_format.hppseqloc / Seq_loc.hpp
blast / format / blastxml2_format.hppseqalign / Seq_align_set.hpp
blast / format / blastxml2_format.hppseq / seqlocinfo.hpp
blast / format / blastxml_format.hppseqloc / Seq_loc.hpp
blast / format / blastxml_format.hppseqalign / Seq_align_set.hpp
blast / format / blastxml_format.hppblastxml / blastxml__.hpp
blast / format / blastxml_format.hppseq / seqlocinfo.hpp
blast / format / build_archive.hppblast / blast__.hpp
blast / format / build_archive.hppscoremat / PssmWithParameters.hpp
blast / format / data4xml2format.hppseq / seqlocinfo.hpp
blast / format / data4xmlformat.hppseq / seqlocinfo.hpp
blast / format / vecscreen_run.hppseqloc / Seq_id.hpp
gnomon / annot.hppseqloc / Seq_loc.hpp
gnomon / asn1.hppseqset / Seq_entry.hpp
gnomon / gnomon.hppseq / Seq_annot.hpp
gnomon / gnomon.hppseqloc / Seq_loc.hpp
id_mapper / id_mapper.hppseq / seq_id_handle.hpp
id_mapper / id_mapper.hppgenomecoll / genome_collection__.hpp
align / mergetree / equiv_range.hppseqloc / seqloc__.hpp
align / mergetree / merge_tree.hppseq / seq_id_handle.hpp
align / mergetree / merge_tree.hppseqloc / Seq_id.hpp
align / mergetree / merge_tree.hppseqalign / Seq_align.hpp
align / mergetree / merge_tree.hppseqalign / Seq_align_set.hpp
align / mergetree / merge_tree.hppseqloc / seqloc__.hpp
align / mergetree / merge_tree_core.hppseqloc / Seq_id.hpp
align / mergetree / merge_tree_core.hppseqalign / Seq_align.hpp
align / mergetree / merge_tree_core.hppseqalign / Seq_align_set.hpp
align / mergetree / merge_tree_core.hppseqloc / seqloc__.hpp
align / ngalign / alignment_filterer.hppseqloc / Na_strand.hpp
align / ngalign / alignment_filterer.hppseqloc / Seq_loc.hpp
align / ngalign / alignment_filterer.hppseqloc / Seq_id.hpp
align / ngalign / alignment_scorer.hppseqloc / Na_strand.hpp
align / ngalign / alignment_scorer.hppseqloc / Seq_loc.hpp
align / ngalign / alignment_scorer.hppseqloc / Seq_id.hpp
align / ngalign / alignment_scorer.hppseqalign / Seq_align.hpp
align / ngalign / alignment_scorer.hppseqalign / Seq_align_set.hpp
align / ngalign / alignment_scorer.hppseqalign / Dense_seg.hpp
align / ngalign / banded_aligner.hppseqloc / Na_strand.hpp
align / ngalign / banded_aligner.hppseqloc / Seq_loc.hpp
align / ngalign / banded_aligner.hppseqloc / Seq_id.hpp
align / ngalign / banded_aligner.hppseqalign / Seq_align.hpp
align / ngalign / banded_aligner.hppseqalign / Seq_align_set.hpp
align / ngalign / banded_aligner.hppseqalign / Dense_seg.hpp
align / ngalign / blast_aligner.hppseqloc / Na_strand.hpp
align / ngalign / blast_aligner.hppseqloc / Seq_loc.hpp
align / ngalign / blast_aligner.hppseqloc / Seq_id.hpp
align / ngalign / blast_aligner.hppseqalign / Seq_align.hpp
align / ngalign / blast_aligner.hppseqalign / Seq_align_set.hpp
align / ngalign / blast_aligner.hppseqalign / Dense_seg.hpp
align / ngalign / inversion_merge_aligner.hppseqloc / Na_strand.hpp
align / ngalign / inversion_merge_aligner.hppseqloc / Seq_loc.hpp
align / ngalign / inversion_merge_aligner.hppseqloc / Seq_id.hpp
align / ngalign / inversion_merge_aligner.hppseqalign / Seq_align.hpp
align / ngalign / inversion_merge_aligner.hppseqalign / Seq_align_set.hpp
align / ngalign / inversion_merge_aligner.hppseqalign / Dense_seg.hpp
align / ngalign / merge_aligner.hppseqloc / Na_strand.hpp
align / ngalign / merge_aligner.hppseqloc / Seq_loc.hpp
align / ngalign / merge_aligner.hppseqloc / Seq_id.hpp
align / ngalign / merge_aligner.hppseqalign / Seq_align.hpp
align / ngalign / merge_aligner.hppseqalign / Seq_align_set.hpp
align / ngalign / merge_aligner.hppseqalign / Dense_seg.hpp
align / ngalign / merge_tree_aligner.hppseqloc / Na_strand.hpp
align / ngalign / merge_tree_aligner.hppseqloc / Seq_loc.hpp
align / ngalign / merge_tree_aligner.hppseqloc / Seq_id.hpp
align / ngalign / merge_tree_aligner.hppseqalign / Seq_align_set.hpp
align / ngalign / ngalign.hppseqloc / Na_strand.hpp
align / ngalign / ngalign.hppseqloc / Seq_loc.hpp
align / ngalign / ngalign.hppseqloc / Seq_id.hpp
align / ngalign / ngalign.hppseqalign / Seq_align.hpp
align / ngalign / ngalign.hppseqalign / Seq_align_set.hpp
align / ngalign / ngalign.hppseqalign / Dense_seg.hpp
align / ngalign / ngalign_interface.hppseqloc / Na_strand.hpp
align / ngalign / result_set.hppseqloc / Na_strand.hpp
align / ngalign / result_set.hppseqloc / Seq_loc.hpp
align / ngalign / result_set.hppseqloc / Seq_id.hpp
align / ngalign / result_set.hppgenomecoll / GC_Assembly.hpp
align / ngalign / sequence_set.hppseqloc / Na_strand.hpp
align / ngalign / sequence_set.hppseqloc / Seq_loc.hpp
align / ngalign / sequence_set.hppseqloc / Seq_id.hpp
align / ngalign / sequence_set.hppseqalign / Seq_align.hpp
align / ngalign / sequence_set.hppseqalign / Seq_align_set.hpp
align / ngalign / sequence_set.hppseqalign / Dense_seg.hpp
align / ngalign / unordered_spliter.hppseqloc / Na_strand.hpp
align / ngalign / unordered_spliter.hppseqloc / Seq_loc.hpp
align / ngalign / unordered_spliter.hppseqloc / Seq_interval.hpp
align / ngalign / unordered_spliter.hppseqloc / Seq_id.hpp
align / ngalign / unordered_spliter.hppseqalign / Seq_align.hpp
align / ngalign / unordered_spliter.hppseqalign / Seq_align_set.hpp
align / ngalign / unordered_spliter.hppseqalign / Dense_seg.hpp
align / nw / nw_aligner.hppseqloc / Na_strand.hpp
align / nw / nw_formatter.hppseqloc / Na_strand.hpp
align / nw / nw_formatter.hppseqloc / Seq_id.hpp
phy_tree / dist_methods.hppbiotree / BioTreeContainer.hpp
phy_tree / dist_methods.hppbiotree / FeatureDescr.hpp
phy_tree / dist_methods.hppbiotree / Node.hpp
phy_tree / dist_methods.hppbiotree / NodeSet.hpp
phy_tree / dist_methods.hppbiotree / NodeFeature.hpp
phy_tree / dist_methods.hppbiotree / NodeFeatureSet.hpp
phy_tree / dist_methods.hppbiotree / FeatureDictSet.hpp
phy_tree / phytree_calc.hppbiotree / BioTreeContainer.hpp
primer / primercheck.hppseqalign / Seq_align.hpp
primer / primercheck.hppseq / Bioseq.hpp
primer / primercheck.hppseqalign / Seq_align_set.hpp
align / prosplign / compartments.hppseqalign / seqalign__.hpp
align / prosplign / prosplign.hppseqalign / seqalign__.hpp
blast / proteinkmer / blastkmeroptions.hppseqloc / Seq_id.hpp
blast / proteinkmer / blastkmerresults.hppseqloc / Seq_id.hpp
seqqa / seqtest.hppseqtest / SeqTestResults.hpp
seqqa / seqtest.hppseqtest / Seq_test_result_set.hpp
seqqa / seqtest.hppseqtest / Seq_test_result.hpp
sequence / align_cleanup.hppseqalign / Seq_align.hpp
sequence / antigenic.hppseqloc / Seq_loc.hpp
sequence / coiled_coil.hppseqloc / Seq_loc.hpp
sequence / gap_analysis.hppseq / Seq_inst.hpp
sequence / gene_model.hppseqfeat / Cdregion.hpp
sequence / gene_model.hppseqloc / Seq_id.hpp
sequence / gene_model.hppseqloc / Seq_loc.hpp
sequence / loc_mapper.hppseqloc / Seq_loc.hpp
sequence / make_cdr_prods.hppseq / Seq_annot.hpp
sequence / make_cdr_prods.hppseqset / Bioseq_set.hpp
sequence / orf.hppseqloc / Seq_loc.hpp
sequence / orf.hppseqloc / Seq_id.hpp
sequence / regexp_loc.hppseqloc / Seq_loc.hpp
sequence / regexp_loc.hppseqloc / Packed_seqint.hpp
sequence / regexp_loc.hppseqloc / Seq_interval.hpp
sequence / restriction.hppseq / Bioseq.hpp
sequence / signal_seq.hppseqloc / Seq_loc.hpp
align / splign / compart_matching.hppseqloc / Seq_id.hpp
align / splign / splign.hppseq / seq_id_handle.hpp
structure / struct_util / struct_util.hppseqset / Seq_entry.hpp
structure / struct_util / struct_util.hppseq / Seq_annot.hpp
structure / struct_util / su_block_multiple_alignment.hppseqalign / Seq_align.hpp
structure / struct_util / su_sequence_set.hppseqset / Seq_entry.hpp
structure / struct_util / su_sequence_set.hppseq / Bioseq.hpp
structure / struct_util / su_sequence_set.hppseqloc / Seq_id.hpp
align / util / align_compare.hppseq / seq_id_handle.hpp
align / util / align_filter.hppseq / seq_id_handle.hpp
align / util / align_shadow.hppseqloc / Seq_id.hpp
align / util / align_shadow.hppseqalign / Seq_align.hpp
align / util / align_shadow.hppseqalign / Dense_seg.hpp
align / util / align_sort.hppseqalign / Seq_align.hpp
align / util / align_sort.hppseq / seq_id_handle.hpp
align / util / align_source.hppseqalign / Seq_align.hpp
align / util / best_placement.hppseqalign / Seq_align_set.hpp
align / util / best_placement.hppseqalign / Seq_align.hpp
align / util / blast_tabular.hppseqalign / Std_seg.hpp
align / util / compartment_finder.hppseqalign / Seq_align_set.hpp
align / util / compartment_finder.hppseqalign / Seq_align.hpp
align / util / compartment_finder.hppseqalign / Std_seg.hpp
align / util / compartment_finder.hppseqalign / Dense_seg.hpp
align / util / compartment_finder.hppseqloc / Seq_loc.hpp
align / util / compartment_finder.hppseqloc / Na_strand.hpp
align / util / compartment_finder.hppseq / Seq_literal.hpp
align / util / depth_filter.hppseqalign / Seq_align.hpp
align / util / genomic_compart.hppseqalign / Seq_align.hpp
align / util / genomic_compart.hppseqalign / Seq_align_set.hpp
align / util / named_collection_score.hppseq / seq_id_handle.hpp
align / util / named_collection_score.hppseqalign / Seq_align_set.hpp
align / util / named_collection_score_impl.hppseq / seq_id_handle.hpp
align / util / named_collection_score_impl.hppseqalign / Seq_align_set.hpp
align / util / score_builder.hppseqalign / Seq_align.hpp
align / util / tabular_fmt.hppgenomecoll / genome_collection__.hpp
align / util / tabular_fmt.hppseqalign / Seq_align.hpp
blast / vdb / vdb2blast_util.hppseq / seq__.hpp
blast / vdb / vdbblast_local.hppscoremat / PssmWithParameters.hpp
winmask / win_mask_config.hppseq / seq_id_handle.hpp
Modified on Fri Jan 05 07:23:37 2024 by modify_doxy.py rev. 669887