blastinput Directory Reference

Directory dependency graph for blastinput:

Directories
directory	demo
directory	unit_test

Files
file	blast_args.cpp [code]
	convert blast-related command line arguments into blast options
file	blast_asn1_input.cpp [code]
	Convert ASN1-formatted files into blast sequence input.
file	blast_fasta_input.cpp [code]
	Convert FASTA-formatted files into blast sequence input.
file	blast_input.cpp [code]
	Convert sources of sequence data into blast sequence input.
file	blast_input_aux.cpp [code]
	Auxiliary functions for BLAST input library.
file	blast_scope_src.cpp [code]
	Defines CBlastScopeSource class to create properly configured CScope objects.
file	blastn_args.cpp [code]
	Implementation of the BLASTN command line arguments.
file	blastp_args.cpp [code]
	Implementation of the BLASTP command line arguments.
file	blastx_args.cpp [code]
	Implementation of the BLASTX command line arguments.
file	cmdline_flags.cpp [code]
	Constant definitions for command line arguments for BLAST programs.
file	deltablast_args.cpp [code]
	Implementation of the DELTA-BLAST command line arguments.
file	igblastn_args.cpp [code]
	Implementation of the IGBLASTN command line arguments.
file	igblastp_args.cpp [code]
	Implementation of the IGBLASTP command line arguments.
file	kblastp_args.cpp [code]
	Implementation of the BLASTP command line arguments.
file	magicblast_args.cpp [code]
file	psiblast_args.cpp [code]
	Implementation of the PSI-BLAST command line arguments.
file	rmblastn_args.cpp [code]
	Implementation of the RMBLASTN command line arguments.
file	rpsblast_args.cpp [code]
	Implementation of the RPSBLAST command line arguments.
file	rpstblastn_args.cpp [code]
	Implementation of the RPSTBLASTN command line arguments.
file	tblastn_args.cpp [code]
	Implementation of the TBLASTN command line arguments.
file	tblastx_args.cpp [code]
	Implementation of the TBLASTX command line arguments.