NCBI C++ ToolKit
cobalt Directory Reference
+ Directory dependency graph for cobalt:

Directories

directory  demo
 
directory  unit_test
 

Files

file  blast.cpp [code]
 Find local alignments between sequences.
 
file  clusterer.cpp [code]
 
file  cobalt.cpp [code]
 Implementation of the CMultiAligner class.
 
file  dist.cpp [code]
 Implementation of CDistances.
 
file  hit.cpp [code]
 Implementation of CHit class.
 
file  hitlist.cpp [code]
 Implementation of CHitList class.
 
file  kmercounts.cpp [code]
 
 
file  options.cpp [code]
 Implementation of the CMultiAlignerOptions class.
 
file  patterns.cpp [code]
 
file  phi.cpp [code]
 Match PHI patterns against a list of sequences.
 
file  prog.cpp [code]
 Perform a progressive multiple alignment.
 
file  resfreq.cpp [code]
 Implementation of CProfileData.
 
file  rps.cpp [code]
 Use RPS blast to find domain hits.
 
file  seg.cpp [code]
 Code that deals with scoring and manipulating alignments ("segments") from BLAST runs.
 
file  seq.cpp [code]
 Implementation of CSequence class.
 
file  seqalign.cpp [code]
 Contents: Seqalign output for a multiple sequence alignment.
 
file  traceback.cpp [code]
 Implementation of CEditScript class.
 
file  tree.cpp [code]
 Implementation of CTree class.
 
Modified on Fri Jul 19 17:08:57 2024 by modify_doxy.py rev. 669887