cobalt Directory Reference

Directory dependency graph for cobalt:

Files
file	base.hpp [code]
	Definitions used by all COBALT aligner components.
file	clusterer.hpp [code]
file	cobalt.hpp [code]
	Interface for CMultiAligner.
file	dist.hpp [code]
	Interface for CDistances class.
file	exception.hpp [code]
	Multiple aligner exceptions.
file	hit.hpp [code]
	Interface for CHit class, used to encapsulate operations involving pairwise alignments.
file	hitlist.hpp [code]
	Interface for CHitList class.
file	kmercounts.hpp [code]
file	links.hpp [code]
file	options.hpp [code]
	Options for CMultiAligner.
file	patterns.hpp [code]
	Interface for default CDD patterns.
file	resfreq.hpp [code]
	Interface for CProfileData.
file	seq.hpp [code]
	Interface for CSequence class.
file	traceback.hpp [code]
	Interface for CEditScript class.
file	tree.hpp [code]
	Interface for CTree class.
file	version.hpp [code]
	CMultiAligner version.