blastinput Directory Reference

Directory dependency graph for blastinput:

Files
file	blast_args.hpp [code]
	Interface for converting blast-related command line arguments into blast options.
file	blast_asn1_input.hpp [code]
file	blast_fasta_input.hpp [code]
	Interface for reading SRA sequences into blast input.
file	blast_input.hpp [code]
	Interface for converting sources of sequence data into blast sequence input.
file	blast_input_aux.hpp [code]
	Auxiliary classes/functions for BLAST input library.
file	blast_scope_src.hpp [code]
	Declares CBlastScopeSource class to create properly configured CScope objects to invoke the BLAST database data loader first and fall back on to the Genbank data loader if the former fails (this is configurable at runtime).
file	blastn_args.hpp [code]
	Main argument class for BLASTN application.
file	blastp_args.hpp [code]
	Main argument class for BLASTP application.
file	blastx_args.hpp [code]
	Main argument class for BLASTX application.
file	cmdline_flags.hpp [code]
	Constant declarations for command line arguments for BLAST programs.
file	deltablast_args.hpp [code]
	Main argument class for DELTA-BLAST application.
file	igblastn_args.hpp [code]
	Main argument class for IGBLASTN application.
file	igblastp_args.hpp [code]
	Main argument class for IGBLASTP application.
file	kblastp_args.hpp [code]
	Main argument class for KBLASTP application.
file	magicblast_args.hpp [code]
file	psiblast_args.hpp [code]
	Main argument class for PSI-BLAST application.
file	rmblastn_args.hpp [code]
	Main argument class for RMBLASTN application.
file	rpsblast_args.hpp [code]
	Main argument class for RPSBLAST application.
file	rpstblastn_args.hpp [code]
	Main argument class for RPS TBLASTN application.
file	tblastn_args.hpp [code]
	Main argument class for TBLASTN application.
file	tblastx_args.hpp [code]
	Main argument class for TBLASTX application.