NCBI C++ ToolKit
composition_adjustment Directory Reference
+ Directory dependency graph for composition_adjustment:

Files

file  compo_heap.h [code]
 Declares a "heap" data structure that is used to store computed alignments when composition adjustment of scoring matrices is used.
 
file  compo_mode_condition.h [code]
 Declarations of functions used to choose the mode for composition-based statistics.
 
file  composition_adjustment.h [code]
 Definitions used in compositional score matrix adjustment.
 
file  composition_constants.h [code]
 Constants used in compositional score matrix adjustment.
 
file  matrix_frequency_data.h [code]
 Definitions used to get joint probabilities for a scoring matrix.
 
file  nlm_linear_algebra.h [code]
 Declarations for several linear algebra routines.
 
file  optimize_target_freq.h [code]
 Routines for finding an optimal set of target frequencies for the purpose of generating a compositionally adjusted score matrix.
 
file  redo_alignment.h [code]
 Definitions used to redo a set of alignments, using either composition matrix adjustment or the Smith-Waterman algorithm (or both.)
 
file  smith_waterman.h [code]
 Definitions for computing Smith-Waterman alignments.
 
file  unified_pvalues.h [code]
 Headers for computing a "composition" p-value of a match, and for computing a unified p-value combining the customary alignment p-value and the new composition p-value.
 
Modified on Wed Apr 17 13:09:13 2024 by modify_doxy.py rev. 669887