NCBI C++ ToolKit
Classes | Functions | Variables
discrepancy_stream.cpp File Reference
#include <ncbi_pch.hpp>
#include "discrepancy_core.hpp"
#include "utils.hpp"
#include <sstream>
#include <objmgr/object_manager.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objmgr/util/sequence.hpp>
#include <serial/objcopy.hpp>
#include <util/compress/stream_util.hpp>
#include <util/line_reader.hpp>
#include <util/format_guess.hpp>
+ Include dependency graph for discrepancy_stream.cpp:

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class  CReadHook_Bioseq_set
class  CReadHook_Bioseq
class  CReadHook_Bioseq_set_class
class  CCopyHook_Bioseq_set
class  CCopyHook_Bioseq
class  CCopyHook_Seq_descr
class  CCopyHook_Seq_annot
class  CCopyHook_Submit_block


 USING_SCOPE (objects)
string Offset ()
unique_ptr< CObjectIStreamOpenUncompressedStream (const string &fname, bool &compressed)


static size_t offset = 0

Function Documentation

◆ Offset()

string Offset ( )

Definition at line 49 of file discrepancy_stream.cpp.

References offset, and string.

Referenced by CLadder::CalcDelta(), CLadder::CreateLadder(), and s_FindGaps().

◆ OpenUncompressedStream()

unique_ptr<CObjectIStream> OpenUncompressedStream ( const string fname,
bool compressed 


USING_SCOPE ( objects  )

Variable Documentation

◆ offset

size_t offset = 0

Definition at line 48 of file discrepancy_stream.cpp.

Referenced by Offset(), and CReadHook_Bioseq_set::ReadObject().

Modified on Thu Apr 11 15:04:07 2024 by rev. 669887